Epitope promiscuity of human monoclonal autoantibodies to T-cell receptor-combining site determinants

To characterize the binding specificity and light- and heavy-chain variable region usage in monoclonal human autoantibodies (mAAbs) to T-cell receptors, we constructed heterohybridomas from peripheral blood B cells of three rheumatoid arthritis (RA) patients. From a panel of more than 200 heterohybridomas secreting IgM autoantibodies binding to T-cell receptor Vbeta chain first complementarity determining segments (CDR1), we characterized two IgM/lambda molecules from a single patient in detail. These bound to both CDR1 peptide epitopes and intact TCR of recombinant single-chain T-cell receptor constructs, and to T-cell surface TCR. Spectratype analysis using epitopes mimicking a set of 24 Vbeta genes indicated that one molecule bound only a few members of the set, whereas the second showed considerable epitope promiscuity by binding to more than half of the tested CDR1 peptides. Both mAAbs used variants of a Vlambda3 gene that were very similar to one another and to the germline gene. The epitope-promiscuous autoantibody used a V(H)4 gene identical to a germline prototype, while the other incorporated a V(H)3 sequence differing in only a single residue from its germline prototype. The CDR3s of both were large and distinct from each other as well as from the corresponding segments of rheumatoid factors and "cold agglutinins" using the same or related V(H) germline genes. These mAAbs offer models for deciphering the basis of epitope promiscuity, and serve as candidates for direct use in immunomodulation because they are of intrinsic human origin and do not require molecular engineering to adapt them for use in therapy.     

Fluorination of the silicon dioxide surface during reactive ion and plasma etching in halocarbon plasmas

Surface sensitive spectroscopies were employed to investigate the surface modifications which occur on SiO₂ during actual reactive ion and plasma etching in CF₄ and CF₄/O₂ plasmas. Photoemission and electron energy loss spectroscopies were used to characterize the composition and bonding in the modified layer. Core level photoemission measurements indicated a reaction layer 10–15 Å thick with a mean composition of SiOF₂. Photoemission and EELS studies of the valence bands identified several features due to Si---F bonding. Comparisons with the SiO₂ valence bands and implications for bonding are discussed. Electron energy loss spectra were also used to determine if ion induced “defect” species formed during reactive etching persist in the reaction layer. A comparison of reactive ion etching samples with those exposed to plasma etching conditions (negligible ion bombardment) indicated that the ion bombarded surfaces exhibit a reduced level of fluorination during steady state etching. Low energy ion scattering was used to determine the composition of the outermost atomic layer. These measurements indicated a fluorine terminated surface with virtually no remaining surface oxygen.     

Measurements of turbulent mixing due to Kelvin–Helmholtz instability in high-energy-density plasmas

Kelvin–Helmholtz (KH) turbulent mixing measurements were performed in experiments on the OMEGA Laser Facility [T.R. Boehly et al., Opt. Commun. 133 (1997) 495]. In these experiments, laser-driven shock waves propagated through low-density plastic foam placed on top of a higher-density plastic foil. Behind the shock front, lower-density foam plasma flowed over the higher-density plastic plasma. The interface between the foam and plastic was KH unstable. The experiments were performed with pre-imposed, sinusoidal 2D perturbations, and broadband 3D perturbations due to surface roughness at the interface between the plastic and foam. KH instability growth was measured using X-ray, point-projection radiography. The mixing layer caused by the KH instability with layer width up to ～100 μm was observed at a location ～1 mm behind the shock front. The measured mixing layer width was in good agreement with simulations using a K–L turbulent mixing model in the two-dimensional ARES hydrodynamics code. In the definition of the K–L model K stands for the specific turbulent kinetic (K) energy, and L for the scale length (L) of the turbulence.     

Diastereoselectivity is in the Details: Minor Changes Yield Major Improvements to the Synthesis of Bedaquiline**

Bedaquiline is a crucial medicine in the global fight against tuberculosis, yet its high price places it out of reach for many patients. Herein, we describe improvements to the key industrial lithiation-addition sequence that enable a higher yielding and therefore more economical synthesis of bedaquiline. Prioritization of mechanistic understanding and multi-lab reproducibility led to optimized reaction conditions that feature an unusual base-salt pairing and afford a doubling of the yield of racemic bedaquiline. We anticipate that implementation of these improvements on manufacturing scale will be facile, thereby substantially increasing the accessibility of this essential medication.