Optical barcoding of colloidal suspensions: applications in genomics,proteomics and drug discovery

The enormous amount of information generated through sequencing of the human genome has increased demands for more economical and flexible alternatives in genomics, proteomics and drug discovery. Many companies and institutions have recognised the potential of increasing the size and complexity of chemical libraries by producing large chemical libraries on colloidal support beads. Since colloid-based compounds in a suspension are randomly located, an encoding system such as optical barcoding is required to permit rapid elucidation of the compound structures. We describe in this article innovative methods for optical barcoding of colloids for use as support beads in both combinatorial and non-combinatorial libraries. We focus in particular on the difficult problem of barcoding extremely large libraries, which if solved, will transform the manner in which genomics, proteomics and drug discovery research is currently performed.     

Internal rotation in molecules dispersed in polymer matrices

Studies of certain polar or photochromic molecules dispersed in polymer matrices show that internal motion may be profoundly affected by the matrix. Thus, in polystyrene, dielectric studies of relatively small molecules show that the inversion motion of the central ring of xanthene becomes possible at temperatures below the recognized β and glass transition temperatures of the polymer. On the other hand, movement of the central oxazole ring in 2,5-diphenyl oxazole becomes marked at temperatures corresponding to the onset of polymer β motion, but dipole reorientation of diphenyl ether is not appreciable below the main glass transition.Considering a slightly larger molecule, the bleaching rate of the coloured isomer of 6′-nitro-1,3,3, trimethylindolinobenzopyrylospiran also depends on the nature of the polymer matrix. The observations are best explained in terms of a matrix-controlled internal rotation in which the photochromic molecules exist in a distribution of environments in the glassy matrix.     

Fine structure in the energy region of the isoscalar giant quadrupole resonance: characteristic scales from a wavelet analysis

Fine structure in the energy region of the isoscalar giant quadrupole resonance in nuclei is observed in high-resolution proton scattering experiments at iThemba LABS over a wide mass range. A novel method based on wavelet transforms is introduced for the extraction of scales characterizing the fine structure. A comparison with microscopic model calculations including two-particle two-hole (2p2h) degrees of freedom identifies the coupling to surface vibrations as the main source of the observed scales. A generic pattern is also found for the stochastic coupling to the background of the more complex states.     

Discrimination of components in atherosclerotic plaques from human carotid endarterectomy specimens by magnetic resonance imaging ex vivo

Specific MRI techniques have been used to determine the dimensional and compositional properties of atherosclerotic lesions in carotid endarterectomy tissues. A quantitative comparison of areas of specific features in typical tissue segments was performed using MR images and histologic images. The mean difference for the measurements by the two methods was 4.5% for the total vessel, 5.3% for the internal carotid artery lumen, and 5.0% for the external carotid lumen. For other less abundant components, the mean difference was 14.2%. For direct characterization, individual tissue components were isolated by microdissection and their T1 and T2 relaxation times measured. Highly calcified areas typically had rather short T1 (452-837 ms) and short T2 (10.4-18.4 ms). In contrast, regions enriched in lipid had much longer T1 (1,380-1,480 ms) and longer T2 (35.3-49.0 ms). Other components such as thrombus had intermediate T1 (1,180 ms) and short T2 (15.4 ms). T2 parametric imaging was used as a complementary approach for segmentation and quantitation of tissue components. In fresh tissue, several different components exhibited different T2 ranges: calcified/solid lipid (13-18 ms). cellular/ECM (9-30 ms), fluid lipid (35-40 ms): fibrous (50-60 ms). These results demonstrate the utility of MRI for identifying and quantifying specific components of atherosclerotic plaque ex vivo, and suggest its value for these measurements in vivo as well.     

Nuclear structure study of37Cl

Properties of levels up to 5 MeV excitation in³⁷Cl were studied with³⁷Cl(p, p′ γ)³⁷Cl,³⁷Cl(α, α′ γ)³⁷Cl and³⁴S(α, pγ)³⁷Cl reactions. Results are discussed with reference to the many-particle shell model with an effective surface delta interaction.     

Blocking of coupling to the 0<Subscript>2</Subscript><Superscript>+</Superscript> excitation in <Superscript>154</Superscript>Gd by the [505]11/2<Superscript>-</Superscript> neutron in <Superscript>155</Superscript>Gd

The concept that the first excited 0⁺ states in N = 90 nuclei are not a b \beta -vibration but a second vacuum formed by the combination of the quadrupole pairing force and the low density of oblate orbitals near the Fermi surface is supported by the blocking of this collective mode in ¹⁵⁴Gd from coupling to the [505]11/2^- single-particle quasi-neutron orbital in ¹⁵⁵Gd . The coupling of this orbital to the 2⁺ g \gamma -vibration in ¹⁵⁴Gd is observed since this coupling is not Pauli-blocked.