Synthesis,Antimicrobial, Anticancer,PASS, Molecular Docking,Molecular Dynamic Simulations & Pharmacokinetic Predictions of Some Methyl β-D-Galactopyranoside Analogs

A series of methyl β-D-galactopyranoside (MGP, 1) analogs were selectively acylated with cinnamoyl chloride in anhydrous N,N-dimethylformamide/triethylamine to yield 6-O-substitution products, which was subsequently converted into 2,3,4-tri-O-acyl analogs with different acyl halides. Analysis of the physicochemical, elemental, and spectroscopic data of these analogs revealed their chemical structures. In vitro antimicrobial testing against five bacteria and two fungi and the prediction of activity spectra for substances (PASS) showed promising antifungal functionality comparing to their antibacterial activities. Minimum inhibition concentration (MIC) and minimum bactericidal concentration (MBC) tests were conducted for four compounds (4, 5, 6, and 9) based on their activity. MTT assay showed low antiproliferative activity of compound 9 against Ehrlich’s ascites carcinoma (EAC) cells with an IC₅₀ value of 2961.06 µg/mL. Density functional theory (DFT) was used to calculate the thermodynamic and physicochemical properties whereas molecular docking identified potential inhibitors of the SARS-CoV-2 main protease (6Y84). A 150-ns molecular dynamics simulation study revealed the stable conformation and binding patterns in a stimulating environment. In-silico ADMET study suggested all the designed molecules to be non-carcinogenic, with low aquatic and non-aquatic toxicity. In summary, all these antimicrobial, anticancer and in silico studies revealed that newly synthesized MGP analogs possess promising antiviral activity, to serve as a therapeutic target for COVID-19.     

Differential optical absorption spectroscopy-based refractive index sensor for cancer cell detection

Optical Review - A novel spectroscopic optical sensor is presented for cancerous cell detection in various parts of the human body (i.e., cervix, adrenal gland, breast, skin, and blood). An...     

Silicon nano crystal filled ellipse core based quasi photonic crystal fiber with birefringence and very high nonlinearity

In this paper, we have proposed a new type of quasi photonic crystal fiber (PCF) with a silicon nano crystal core. This structure can be used to sense aqueous analysis over a wavelength range of 1.00?µm to 3.00?µm. The properties of this structure are simulated using the vector-finite element method (VFEM) employing a boundary condition. The proposed model provides a significant effect of birefringence and a very high nonlinear coefficient for two different fundamental modes, which are obtained by adjusting the size of the silicon nano crystal filled ellipse core. This provides a high nonlinearity of 4.2?×?10⁵ W^?1Km^?1 and a birefringence of ? 3.2?×?10^?1 at the wavelengths 1.00?µm and 3.00?µm, respectively. Some others properties, such as the effective area, scattering loss, confinement loss, numerical aperture (NA)and power fraction are also analyzed to measure the performance of this structure. The proposed model is useful for sensing and biomedical imaging applications. The proposed structure may also find extensive applications in optical communication and sensor systems.     

RAMA stain: A fast,sensitive and less protein‐modifying CBB R250 stain

SDS‐PAGE and CBB staining are two of the most popular methods used for protein analysis. Although many reports that describe such staining methods have been published, these conventional protocols require several hours or days for staining and de‐staining. In this study we describe a recently developed, fast and sensitive CBB staining method that utilizes the staining solution of RAMA that consists of the low‐cost reagents: CBB R250, acetic acid, methanol and ammonium sulfate, and the destaining solution of water. Our method dose dependently detects 12 nanograms protein within 60 min and with a wide protein spectrum. Although the features of the dose‐dependent relationship depend upon protein amounts and protein types, for most of the protein samples tested, a linear relationship was observed in the region from 12 to 330 ng. Moreover, through further washing, the detection sensitivity of protein is enhanced and reaches a maximum at 1.4 ng and then gradually decreases in the de‐staining process. It has been shown recently through MS analyses that the sensitive colloidal CBB staining methods frequently result in artifactual methylations due to the strong acid and long contact during staining and the destaining processes. Such artifacts were reported to be reduced by the replacement of strong inorganic acid with acetic acid and because RAMA utilizes acetic acid and is in contact with the proteins for a short time during staining and de‐staining, it is expected that in vitro artifacts will be reduced. Finally, MS analyses of RAMA‐stained protein bands were revealed not to have been methylated.     

Proposition of an Environment Friendly Triple Junction Solar Cell Based on Earth Abundant CBTSSe/CZTS/ACZTSe Materials

We propose a triple junction CBTSSe/CZTS/ACZTSe solar cell using earth abundant and non‐toxic CBTSSe, CZTS, and ACZTSe as the primary absorbing layers for top, middle, and bottom cells, respectively. Using rigorous optoelectronic simulation, we analyze the performance of the proposed cell and vary absorber thicknesses in order to maximize its efficiency. The maximum obtainable efficiency is calculated to be 36.04% with 2.73 V open circuit voltage, 17.88 mA cm^?2 short circuit current density, and 73.7% fill factor including Shockley–Read–Hall, surface and radiative recombination mechanisms. The maximum achievable efficiency can be obtained from an optimized device structure with 250, 300, and 1000 nm thicknesses of CBTSSe, CZTS, and ACZTSe, respectively. The design and analyses presented in this work would help in achieving highly efficient eco‐friendly inorganic solar cells.     

Detection of cancer affected cell using Sagnac interferometer based photonic crystal fiber refractive index sensor

Optical and Quantum Electronics - A complex studies of optoelectronics, non-linear optical and laser stimulated piezoelectric features of chalcogenide powder-like chalcogenide crystals pure and...     

Toward Efficient Design of Flip-flops in Quantum-Dot Cellular Automata with Power Dissipation Analysis

Quantum-dot cellular automata (QCA) is one of the emergent nano-technologies and a potential substitute for transistor based technologies. In this research, an efficient QCA based T, SR and JK flip-flops have been proposed. The proposed gates are implemented with multiplexer, three-input Majority gate and XOR gate. The circuit layouts are designed and verified using QCADesigner version 2.0.3. The simulation result reviles the excellence of the proposed design. The proposed T flip-flop archives 35% improvement in terms cell count. Similarly, the reported RS and JK flip-flop requires 43% and 50% less area respectively in comparison to the previous best single layer design. In addition, QCAPro tool has been used to estimate the power dissipation of all considered designs at different tunneling energy level.     

Ultra-high negative dispersion compensating square lattice based single mode photonic crystal fiber with high nonlinearity

Optical Review - This paper presents dispersion tailoring of photonic crystal fibers creating artificial defect along one of the regular square axes. A finite element method (FEM) has been enforced...     

Diverse Localization Patterns of an R-Type Lectin in Marine Annelids

Lectins facilitate cell–cell contact and are critical in many cellular processes. Studying lectins may help us understand the mechanisms underlying tissue regeneration. We investigated the localization of an R-type lectin in a marine annelid (Perinereis sp.) with remarkable tissue regeneration abilities. Perinereis nuntia lectin (PnL), a galactose-binding lectin with repeating Gln-X-Trp motifs, is derived from the ricin B-chain. An antiserum was raised against PnL to specifically detect a 32-kDa lectin in the crude extracts from homogenized lugworms. The antiserum detected PnL in the epidermis, setae, oblique muscle, acicula, nerve cord, and nephridium of the annelid. Some of these tissues and organs also produced Galactose (Gal) or N-acetylgalactosamine (GalNAc), which was detected by fluorescent-labeled plant lectin. These results indicated that the PnL was produced in the tissues originating from the endoderm, mesoderm, and ectoderm. Besides, the localizing pattern of PnL partially merged with the binding pattern of a fluorescent-labeled mushroom lectin that binds to Gal and GalNAc. It suggested that PnL co-localized with galactose-containing glycans in Annelid tissue; this might be the reason PnL needed to be extracted with haptenic sugar, such as d-galactose, in the buffer. Furthermore, we found that a fluorescein isothiocyanate-labeled Gal/GalNAc-binding mushroom lectin binding pattern in the annelid tissue overlapped with the localizing pattern of PnL. These findings suggest that lectin functions by interacting with Gal-containing glycoconjugates in the tissues.