Cross-Talk between Overlap Interactions in Biomolecules: A Case Study of the β-Turn Motif

Noncovalent interactions play a pivotal role in regulating protein conformation, stability and dynamics. Among the quantum mechanical (QM) overlap-based noncovalent interactions, n→π* is the best understood with studies ranging from small molecules to β-turns of model proteins such as GB1. However, these investigations do not explore the interplay between multiple overlap interactions in contributing to local structure and stability. In this work, we identify and characterize all noncovalent overlap interactions in the β-turn, an important secondary structural element that facilitates the folding of a polypeptide chain. Invoking a QM framework of natural bond orbitals, we demonstrate the role of several additional interactions such as n→σ* and π→π* that are energetically comparable to or larger than n→π*. We find that these interactions are sensitive to changes in the side chain of the residues in the β-turn of GB1, suggesting that the n→π* may not be the only component in dictating β-turn conformation and stability. Furthermore, a database search of n→σ* and π→π* in the PDB reveals that they are prevalent in most proteins and have significant interaction energies (∼1 kcal/mol). This indicates that all overlap interactions must be taken into account to obtain a comprehensive picture of their contributions to protein structure and energetics. Lastly, based on the extent of QM overlaps and interaction energies, we propose geometric criteria using which these additional interactions can be efficiently tracked in broad database searches.     

Thermal properties of bisitaconimide and bisbenzoxazine blends

Blends of cardanol-based bisbenzoxazine (BZc) and 4,4′-bisitaconimidodiphenyl ether (BIM) having nine different mass ratios (i.e. 100:0, 90:10, 75:25, 60:40, 50:50, 40:60, 25:75, 10:90 and 0:100) were prepared and their curing behaviour was studied by differential scanning calorimetry (DSC) and fourier transform infrared spectroscopy. A curing mechanism comprising two-steps: (1) homopolymerization and co-curing reaction of itaconimide with alkyl side chain double bonds of cardanol BZc at lower temperature (~443 K) and (2) ring-opening polymerization of oxazine at higher temperature (~453–483 K) has been proposed. The T _g of the cured resin blends was determined by DSC and the increase in BIM content in the blend resulted in an increase in T _g from 408 K BZc to 474 K BIM. Increase in bisitaconimide content resulted in improvement of char yield at 1,073 K as well as an increase in mass loss temperatures (5 and 10 %). Compared to BZc, the blends showed a higher thermal stability. The lap shear strength of these blends in metal–metal joints was investigated at 323, 523 and 573 K.     

Blends of benzoxazine monomers

This article describes synthesis, characterization and properties of blends of benzoxazine (Bz) monomers, i.e., m-alkylphenyl-3,4-dihydro-2H-benzoxazine (Bz-C), 6,6′-(propane-2,2-diyl)bis(3-phenyl-3,4-dihydro-2H-benzoxazine (Bz-A) and 3-phenyl-3,4-dihydro-2H-benzoxazine-p-carboxylic acid (Bz-pA). Binary blends of Bz-C with Bz-pA, and Bz-A with Bz-pA were prepared by first synthesizing Bz-C or Bz-A followed by the addition of all the ingredients of Bz-pA. In a similar manner, ternary blends of Bz-C, Bz-A and Bz-pA were prepared by first synthesizing Bz-C and subsequent addition of all the ingredients of Bz-A and Bz-pA in one pot. The Bz monomer blends were characterized by ¹H-NMR, FTIR spectroscopy, and differential scanning calorimetry. The temperature of onset of curing (T _o), due to ring-opening polymerization of Bz was found to decrease significantly by incorporation of carboxyl groups (Bz-pA) showing thereby the catalytic effect of acid functionality. Bz polymers showed good thermal stability and incorporation of Bz-pA in blends resulted in a highly cross-linked network. The interlaminar shear strength of glass fabric reinforced composites and the lap shear strength of metal–metal joints using these resin blends was also investigated.     

Leak detection in a high-pressure heat exchanger system in a refinery using radiotracer technique

A radiotracer investigation was carried out in a diesel hydrotreater (DHDT) unit in a refinery for leak detection in a breech-lock heat exchanger system. The main objectives of the study were to identify the leaking heat exchanger in a system with six heat exchangers and estimate the leak rate. Bromine-82 as dibromobiphenyl was selected and used as radiotracer for the investigation. The radiotracer was instantaneously injected into the suction end of the feed pump line to the heat exchanger of the DHDT unit. The movement of the tracer was measured at strategically selected locations using NaI(Tl) scintillation detectors. Based upon the results of the radiotracer investigation, it was found that out of six heat exchangers, exchanger E-1F was leaking.     

A study of a fast ionic conductor–Ag1−xCuxI

The Conductivity of AgI–CuI system has been studied. Two molar ratios of the system Ag_1–xCu_xI with x = 0.05 and 0.15 have been taken. The transition temperatures are observed with conductivity measurements.     

Increasing protein stability by engineering the n → π* interaction at the β-turn

Abundant n → π* interactions between adjacent backbone carbonyl groups, identified by statistical analysis of protein structures, are predicted to play an important role in dictating the structure of proteins. However, experimentally testing the prediction in proteins has been challenging due to the weak nature of this interaction. By amplifying the strength of the n → π* interaction via amino acid substitution and thioamide incorporation at a solvent exposed β-turn within the GB1 proteins and Pin 1 WW domain, we demonstrate that an n → π* interaction increases the structural stability of proteins by restricting the ϕ torsion angle. Our results also suggest that amino acid side-chain identity and its rotameric conformation play an important and decisive role in dictating the strength of an n → π* interaction.

Amino acid residues adopt a right-handed α-helical conformation with increasing strength of the n → π* interaction. We also demonstrate a direct consequence of n → π* interactions on enhancing the structural stability of proteins.     

Spectral,thermal, and electrical properties of poly(o- and m-toluidine)-polystyrene blends prepared by emulsion pathway

Conducting poly(o-toluidine) (POT) and poly(m-toluidine) (PMT) blends containing 10, 30, 50, 70, and 90 % wt/wt of polystyrene (PSt) were prepared by employing a two-step emulsion pathway. The bands characteristic of both polystyrene and POT/PMT are present in the IR spectra of POT–PSt and PMT–PSt blends. The UV-visible spectra of POT–PSt and PMT–PSt blends exhibit two bands around 313 and 610 nm, confirming that some amount of POT/PMT base is present in the blends. The EPR parameters such as line width and spin concentration reveal the presence of POT/PMT salt in the respective blends. The TGA, DTA, and DSC results suggest a higher thermal stability for the POT and PMT blends than that for the respective salts. The conductivity values of POT(70)–PSt(30) and POT(90)–PSt(10) blends are almost the same (1.1 × 10⁻² and 1.3 × 10⁻² S cm⁻¹, respectively) and these values are very close to that of pure POT salt, suggesting that POT can be blended with up to 30% wt/wt of PSt to improve its mechanical properties without a significant drop in its conductivity. The conductivity values of PMT–PSt blends are lower than those of the corresponding POT–PSt blends by two to three orders of magnitude, indicating that POT is a better system than PMT to prepare blends by this method. The dielectric constant and tan δ values of the blends increase with the amount POT/PMT and are greater than that of polystyrene. © 1998 John Wiley & Sons, Inc. J. Polym. Sci. A Polym. Chem. 36: 2291–2299, 1998     

Is the Cassie-Baxter formula relevant?

The utility of the Cassie-Baxter formula to predict the apparent contact angle of a drop on rough hydrophobic surfaces has been questioned recently. To resolve this issue, experimental and numerical data for advancing and receding contact angles are reported. In all cases considered it is seen that contact angles follow the overall trend of the Cassie-Baxter formula, except for the advancing front on pillar type roughness. It is shown that deviations from the Cassie-Baxter angle have a one-to-one correlation with microscopic distortions of the contact line with respect to its configuration in the Cassie-Baxter state.     

Tandem and chemoselective synthesis of benzil derivatives from styrene and arene diazonium salts

A facile and practically applied protocol for synthesis of benzil derivatives using styrene and arene diazonium salts is reported. Pd(OAc)₂/SeO₂ catalytic system was found to be efficient for chemoselective synthesis of benzil. Selenium dioxide works well as an oxidant under milder reaction conditions. Moderate to very good yields of the desired products were obtained.