The solid-phase synthesis and use of N-monosubstituted piperazines in chemical library synthesis

An efficient solid-phase synthesis of mono-N-substituted piperazines is presented. The key transformation involves a selective borane amide bond reduction in the presence of a carbamate resin linkage. This synthetic route takes advantage of the large diverse pool of commercially available carboxylic acids, acid chlorides, and sulfonyl chlorides. The solid-phase approach facilitates parallel processing by eliminating the need for column chromatography after each synthetic step. The N-monosubstituted piperazines were shown to react with polymeric activated tetrafluorophenol (TFP) reagents to generate arrays of amides and sulfonamides in good purity for biological testing.     

Synthesis of Peptide Cysteine Dimedone Using Fmoc-Cys(Dmd)-OH: Glutathione Cysteine Dimedone as a Probe in Investigating the Sulfenic Acid Mediated Oxidation of Glutathione

Dimedone is the most widely used chemical probe for detection of cysteine sulfenic acid in peptides and proteins. The reaction of dimedone with cysteine sulfenic acid results in the formation of unique cysteine dimedone motif containing thioether bridge. Based on the structure of cysteine dimedone residue in polypeptide, a new building block of Fmoc-Cys(Dmd)-OH was developed for solid phase synthesis of peptide cysteine dimedone. Mass spectrometric sequencing of synthetic peptides have confirmed successful incorporation of cysteine dimedone in peptide chain using HBTU/HOBt as a coupling agent. The new method permits synthesis of peptides containing both cysteine thiol and cysteine dimedone in the same sequence which was difficult to achieve by conventional methods. The synthetic peptide of glutathione cysteine dimedone was used as a standard in probing the air-mediated oxidation of thiol to disulfide form of glutathione. The co-elution of standard peptide and reaction mixture of oxidation of glutathione in presence of dimedone using RP-HPLC have confirmed the formation of glutathione cysteine sulfenic as an intermediate in the air-mediated oxidation of glutathione. The synthetic peptides of cysteine dimedone may find application in the field of redox proteomics and generation of antibodies against modified cysteine residue.     

Conformational analysis of bradykinin by annealed molecular dynamics and comparison to NMR-derived conformations

Conformational analysis of bradykinin (BK), a nonapeptide of the sequence RPPGFSPFR, was accomplished using annealed molecular dynamics (AMD) at 1000 K in BIOGRAF 2.2. One hundred anneal cycles produced 100 conformations over approximately 2000 ps. These conformations were compared to structures derived by nuclear magnetic resonance (NMR) methods for similar shape and energy. Energy minimization of relevant conformations using both BIOGRAF 2.2 and AMBER 3.0a revealed that the AMD-determined conformations are in the same energy range as the NMR-determined structures. Also, the shape of the relevant conformations appeared similar, suggesting that AMD is a good tool for the conformational analysis of small peptide ligands. © 1993 John Wiley & Sons, Inc.     

Annulation of primary amines to piperazines and diazaspirocycles utilizing alpha-methyl benzyl resin

The microwave-assisted solid-phase synthesis of piperazines, 3,9-diazaspiro[5.5]undecanes and 2,9-diazaspiro[5.5]undecanes is reported. The synthesis relies on the direct annulation of primary amines with resin-bound bismesylates. Critical to the success of this chemistry was the development of alpha-methyl benzyl carbamate resin linker. This resin permits the cleavage of the heterocycles under mildly acidic conditions, free of contaminating linker-derived N-alkylated byproducts.     

General and efficient synthetic approach to novel tricyclic spiroketones

A general and efficient synthetic approach to tricyclic spiroketones of interest as useful scaffolds in drug discovery was developed. Starting from commercially available benzyl 4-oxo-1-piperidinecarboxylate (5), spirocyclic tetralone 4, spirocyclic indanone 14, and spirocyclic benzocycloheptanone 15 were synthesized via six reaction steps in excellent overall yield.     

Discovery of enzyme inhibitors through combinatorial chemistry

Summary This review serves to highlight the recent examples of combinatoric methodology as applied to the discovery and optimization of enzyme inhibitors. Early research efforts focused on the identification of polypeptides from libraries as inhibitors of proteases. As solution- and solid-phase chemistries gain in sophistication, libraries containing less peptidic structural motifs have been created. A recurring design stratagem relies on the synthesis of libraries incorporating pharmacophores with known affinity for the target enzyme. Screening of these structure-based libraries has led to the discovery of small-molecule inhibitors of both proteolytic and non-proteolytic enzymes alike. Two tables are provided listing the enzyme targeted libraries through 1996. A name, generic structure and size is given for each library citation, accompanied by the enzyme screen and the structure and potency of the most active library member.     

XPS and UPS study of oxygen adsorption on Re(0001) at low temperatures

Oxygen adsorption was studied in the temperature range 50–300 K. Three adsorbed states were found: (i) an atomic state existing in the whole temperature range, (ii) a molecular state (physisorbed oxygen molecule) between 50 and 80 K, (iii) a peroxide state whose bond order between the two oxygen atoms is around one and which exists between 80 and 300 K.     

Decontamination of chemical warfare agents using perchloroethylene–Marlowet IHF–H2O-based microemulsions: wetting and extraction properties on realistic surfaces

At the present time, considerable efforts are being made to develop new media for the decontamination of a variety of toxic compounds. In the present contribution, new microemulsions with promising properties are presented. Moreover, the decontamination of surfaces, with an emphasis on varnished metal surfaces of exterior and interior equipment, is investigated using these microemulsions. Studies of the phase behavior of the system water–perchloroethylene–IHF–2-propanol are reported and the microemulsion phases are recognized. The wetting behavior on contaminated surfaces and the extraction capabilities with respect to contaminants are essential for an efficient decontamination. Hence, suitable microemulsions are identified on the basis of these properties. The decontamination efficiency of these microemulsions is first estimated on the basis of the ability to wet typical chemical nonresistant varnished steel sheets, which are authentic model systems for real surfaces. Afterwards, promising microemulsions and, as reference, different solvents are tested with respect to their capability to solubilize sulfur-mustard agent, again using realistic surfaces contaminated with this chemical warfare agent. Several microemulsions are found, which have the desired properties.