Oligonucleotide-Based Approaches to Inhibit Dengue Virus Replication

Dengue fever is one of the most common viral infections affecting humans. It is an expanding public health problem, particularly in tropical and subtropical regions. No effective vaccine or antiviral therapies against Dengue virus (DENV) infection are available. Therefore, there is a strong need to develop safe and effective therapeutic strategies that can reduce the burden and duration of hospitalizations due to this life-threatening disease. Oligonucleotide-based strategies are considered as an attractive means of inhibiting viral replication since oligonucleotides can be designed to interact with any viral RNA, provided its sequence is known. The resultant targeted destruction of viral RNA interferes with viral replication without inducing any adverse effects on cellular processes. In this review, we elaborate the ribozymes, RNA interference, CRISPR, aptamer and morpholino strategies for the inhibition of DENV replication and discuss the challenges involved in utilizing such approaches.     

GPU‐accelerated direct numerical simulations of decaying compressible turbulence employing a GKM‐based solver

Gas Kinetic Method‐based flow solvers have become popular in recent years owing to their robustness in simulating high Mach number compressible flows. We evaluate the performance of the newly developed analytical gas kinetic method (AGKM) by Xuan et al. in performing direct numerical simulation of canonical compressible turbulent flow on graphical processing unit (GPU)s. We find that for a range of turbulent Mach numbers, AGKM results shows excellent agreement with high order accurate results obtained with traditional Navier–Stokes solvers in terms of key turbulence statistics. Further, AGKM is found to be more efficient as compared with the traditional gas kinetic method for GPU implementation. We present a brief overview of the optimizations performed on NVIDIA K20 GPU and show that GPU optimizations boost the speedup up‐to 40x as compared with single core CPU computations. Hence, AGKM can be used as an efficient method for performing fast and accurate direct numerical simulations of compressible turbulent flows on simple GPU‐based workstations. Copyright © 2016 John Wiley & Sons, Ltd.     

Effect of Cationic Lipid Nanoparticle Loaded siRNA with Stearylamine against Chikungunya Virus

Chikungunya is an infectious disease caused by mosquito-transmitted chikungunya virus (CHIKV). It was reported that NS1 and E2 siRNAs administration demonstrated CHIKV inhibition in in vitro as well as in vivo systems. Cationic lipids are promising for designing safe non-viral vectors and are beneficial in treating chikungunya. In this study, nanodelivery systems (hybrid polymeric/solid lipid nanoparticles) using cationic lipids (stearylamine, C9 lipid, and dioctadecylamine) and polymers (branched PEI-g-PEG -PEG) were prepared, characterized, and complexed with siRNA. The four developed delivery systems (F1, F2, F3, and F4) were assessed for stability and potential toxicities against CHIKV. In comparison to the other nanodelivery systems, F4 containing stearylamine (Octadecylamine; ODA), with an induced optimum cationic charge of 45.7 mV in the range of 152.1 nm, allowed maximum siRNA complexation, better stability, and higher transfection, with strong inhibition against the E2 and NS1 genes of CHIKV. The study concludes that cationic lipid-like ODA with ease of synthesis and characterization showed maximum complexation by structural condensation of siRNA owing to high transfection alone. Synergistic inhibition of CHIKV along with siRNA was demonstrated in both in vitro and in vivo models. Therefore, ODA-based cationic lipid nanoparticles can be explored as safe, potent, and efficient nonviral vectors overcoming siRNA in vivo complexities against chikungunya.     

Surface plasma waves over bismuth-vacuum interface

A surface plasma wave (SPW) over bismuth-vacuum interface has a signature of mass anisotropy of free electrons. For SPW propagation along the trigonal axis there is no birefringence. The frequency cutoff of SPW lies in the far infrared region and can be accessed using free electron laser. The damping rate of waves at low temperatures is low. The surface plasma wave may be excited by an electron beam of current ∼100 mA propagating parallel to the interface in its close proximity.     

Realisations of quantum GL p,q(2) and Jordanian GLh,h′(2)

The quantum group GL _p,q(2) is known to be related to the Jordanian GL_h,h(2) via a contraction procedure. It can also be realised using the generators of the Hopf algebra G _r,s. We contract the G _r,s quantum group to obtain its Jordanian analogue G _m,k, which provides a realisation of GL_h,h(2) in a manner similar to the q-deformed case.     

Intense Upconversion Luminescence of Yb<Superscript>3+</Superscript>-Er<Superscript>3+</Superscript> in Li<Subscript>2</Subscript>O Content Tungsten-tellurite Glasses

The Er³⁺ -Yb³⁺ codoped in Li₂O content tungsten -tellurite (TWL) transparent glasses are synthesized and measured the absorption, Raman and upconversion luminescence (UPL) spectra. At room temperature intense green emission peak at 560 nm ( ⁴S_3/2→⁴I_15/2) and red emission peak at 670 nm ( ⁴F_9/2→⁴I_15/2) of Er³⁺ observed even at minimum 86 mW pumping power of infrared 980 nm excitation. For structure of the TWL glass, Raman spectrum result revealed that an important role of WO₃ in the formation of glass network linkage with Li₂O. Under this influence estimated lifetime of the ⁴I_11/2 of Er³⁺ was 1.89 μs and due to lower phonon energy of the glass produce strong upconversion signal. The effect of Er₂O₃ concentration on emission intensity result indicated that green emission intensity initially increase in compare to red emission. Under the 980 nm pump power variation measured the relatively increases the red emission to the green emission intensity and analyze the possible upconversion mechanism and process.     

A low-cost Raman spectrometer design used to study Raman scattering from a single-walled carbon nanotube

The paper discusses the design of a low cost Raman spectrometer. Single-walled nanotubes (SWNT) have been studied to demonstrate the reach of such a system. We observe both the radial-breathing mode (RBM) and the tangential mode from the SWNT. The tube diameters of the SWNT used in these experiments have been determined using RBM to be predominantly 1.4 and 1.6 nm. These are consistent with the TEM images taken of the same sample. The new method of producing SWNT using Ni-Y catalyst in electric-arc discharge method produces nanotubes with very small dispersion in diameter and high yields. The chirality of the SWNT can be deduced from their radial breathing modes, and it suggests that they are metallic in nature. Dedicated to Professor C N R Rao on his 70th birthday     

Nonlinear Longitudinal Vibrations of Transversally Polarized Piezoceramics: Experiments and Modeling

Nonlinear behavior of piezoceramics at strong electric fields is a well-known phenomenon and is described by various hysteresis curves. On the other hand, nonlinear vibration behavior of piezoceramics at weak electric fields has recently been attracting considerable attention. Ultrasonic motors (USM) utilize the piezoceramics at relatively weak electric fields near the resonance. The consistent efforts to improve the performance of these motors has led to a detailed investigation of their nonlinear behavior. Typical nonlinear dynamic effects can be observed, even if only the stator is experimentally investigated. At weak electric fields, the vibration behavior of piezoceramics is usually described by constitutive relations linearized around an operating point. However, in experiments at weak electric fields with longitudinal vibrations of piezoceramic rods, a typical nonlinear vibration behavior similar to that of the USM-stator is observed at near-resonance frequency excitations. The observed behavior is that of a softening Duffing-oscillator, including jump phenomena and multiple stable amplitude responses at the same excitation frequency and voltage. Other observed phenomena are the decrease of normalized amplitude responses with increasing excitation voltage and the presence of superharmonics in spectra. In this paper, we have attempted to model the nonlinear behavior using higher order (quadratic and cubic) conservative and dissipative terms in the constitutive equations. Hamilton's principle and the Ritz method is used to obtain the equation of motion that is solved using perturbation techniques. Using this solution, nonlinear parameters can be fitted from the experimental data. As an alternative approach, the partial differential equation is directly solved using perturbation techniques. The results of these two different approaches are compared.