Synthesis of a transition metal-dithionite complex, (η5-C5H5)(CO)2FeS(O)2S(O)2Fe(CO)2(η5-C5H5)

The reaction of Na[η⁵-C₅H₅Fe(CO)₂] with large excess of SO₂ in THF at ?78°C followed by warming to room temperature affords an iron—dithionite complex, (η⁵-C₅H₅)(CO)₂FeS(O)₂S(O)₂Fe(CO)₂(η⁵-C₅H₅).     

Reactions of methyltris(triarylphosphine)cobalt : I. Formation of biaryls

Methyltris(triarylphosphine)cobalt (Ar₃P)₃CoCH₃, decomposes in solutions of THF, benzene or chlorobenzene to yield biaryls. Coupling to biaryls occurs at the ring carbon originally bonded to phosphorus. Mixed biaryls are obtained from crossover reactions of complexes bearing different triarylphosphine ligands and reactions of complexes with free triarylphosphines.     

Analytical techniques for determining biotin

Biotin is a vitamin of the B-complex, which plays an important biochemical role in every living cell. In the recent years, the interest in this vitamin has been rekindled, mainly due to its association with serious human disorders, such as the inherited syndrome multiple carboxylase deficiency, which can be successfully treated with biotin administration. Diagnosis of biotin deficiency as well as monitoring of biotin levels in biological fluids of patients receiving biotin treatment is crucial. Equally important is the determination of biotin levels in pharmaceutical preparations as well as in food and food supplement products, which constitute the main source of biotin in humans. Several analytical methods for measuring biotin in various samples, e.g. human fluids, pharmaceutical formulations, food material etc., have been reported in the literature. In this review, the most representative of these methods are presented, and their characteristics are evaluated.     

Genome-based proteomics

Protein-protein interactions play crucial roles in various biological pathways and functions. Therefore, the characterization of protein levels and also the network of interactions within an organism would contribute considerably to the understanding of life. The availability of the human genome sequence has created a range of new possibilities for biomedical research. A crucial challenge is to utilize the genetic information for better understanding of protein distribution and function in normal as well as in pathological biological processes. In this review, we have focused on different platforms used for systematic genome-based proteome analyses. These technologies are in many ways complementary and should be seen as various ways to elucidate different functions of the proteome.     

Studying dispersoid systems

Summary Measurements of energy transformation in mitochondria are done on a capillary differential titration calorimeter CTD2156. It is important to mention that a sediment is quickly formed by the mitochondria suspension without mixing by means of a vibrating needle. During the measurements, the vibrating needle is located inside the working volume of the chamber. The design of the calorimeter is substantiated theoretically. It provides a new mode of a reagent input in the measuring volume of the calorimetric chambers. It expands the spectrum of tasks that can be solved using this instrument. In the capillary calorimeter the calorimetric chambers unit is simple and small in size. These advantages of capillary chambers provide an opportunity to unite 20 capillary calorimetric chambers in one calorimetric block. It allows designing a multi-channel titration calorimeter. There are obvious advantages of such a calorimeter over other instruments in screening researches and in researches of objects maintaining stability only for a short time.     

Escherichia coli single-stranded DNA-binding protein,a molecular tool for improved sequence quality in pyrosequencing

Pyrosequencing is a four-enzyme bioluminometric DNA sequencing technique based on a DNA sequencing by synthesis principle. Currently, the technique is limited to analysis of short DNA sequences exemplified by single-nucleotide polymorphism analysis. In order to expand the field for pyrosequencing, the read length needs to be improved and efforts have been made to purify reaction components as well as add single-stranded DNA-binding protein (SSB) to the pyrosequencing reaction. In this study, we have performed a systematic effort to analyze the effects of SSB by comparing the pyrosequencing result of 103 independent complementary DNA (cDNA) clones. More detailed information about the cause of low quality sequences on templates with different characteristics was achieved by thorough analysis of the pyrograms. Also, real-time biosensor analysis was performed on individual cDNA clones for investigation of primer annealing and SSB binding on these templates. Results from these studies indicate that templates with high performance in pyrosequencing without SSB possess efficient primer annealing and low SSB affinity. Alternative strategies to improve the performance in pyrosequencing by increasing the primer-annealing efficiency have also been evaluated.     

Mechanism of the oxidation of L-ascorbic acid by the bis(pyridine-2,6-dicarboxylate)cobaltate(III) ion in aqueous solution

A detailed investigation of the oxidation of L-ascorbic acid (H₂A) by the title complex has been carried out using conventional spectrophotometry at 510 nm, over the ranges: 0.010 [ascorbate] _T 0.045 mol dm^–3, 3.62 pH 5.34, and 12.0 30.0 °C, 0.50 I 1.00 mol dm^–3, and at ionic strength 0.60 mol dm^–3 (NaClO₄). The main reaction products are the bis(pyridine-2,6-dicarboxylate)cobaltate(II) ion and l-dehydroascorbic acid. The reaction rate is dependent on pH and the total ascorbate concentration in a complex manner, i.e., k _obs = (k ₁ K ₁)[ascorbate] _T /(K ₁ + [H⁺]). The second order rate constant, k ₁ [rate constant for the reaction of the cobalt(III) complex and HA^–] at 25.0 °C is 2.31 ± 0.13 mol^–1 dm³ s^–1. H = 30 ± 4 kJ mol^–1 and S = –138 ± 13 J mol^–1 K^–1. K ₁, the dissociation constant for H₂A, was determined as 1.58 × 10^–4 mol dm^–3 at an ionic strength of 0.60 mol dm^–3, while the self exchange rate constant, k ₁₁ for the title complex, was determined as 1.28 × 10^–5 dm³ mol^–1 s^–1. An outer-sphere electron transfer mechanism has been proposed.     

Pyridine Carboxamides Based on Sulfobetaines: Design,Reactivity, and Biological Activity

The synthesis of the products of the 1,3-propanesultone ring opening during its interaction with amides of pyridinecarboxylic acids has been carried out. The dependence of the yield of the reaction products on the position (ortho-, meta-, para-) of the substituent in the heteroaromatic fragment and temperature condition was revealed. In contrast to the meta- and para-substituted substrates, the reaction involving ortho-derivatives at the boiling point of methanol unexpectedly led to the formation of a salt. On the basis of spectroscopic, X-Ray, and quantum-chemical calculation data, a model of the transition-state, as well as a mechanism for this alkylation reaction of pyridine carboxamides with sultone were proposed in order to explain the higher yields obtained with the nicotinamide and its N-methyl analog compared to ortho or meta parents. Based on the analysis of ESP maps, the positions of the binding sites of reagents with a potential complexing agent in space were determined. The in silico evaluation of possible biological activity showed that the synthetized compounds revealed some promising pharmacological effects and low acute toxicity.     

Controlled,one-pot synthesis of recyclable poly(1,3-diene)-polyester block copolymers,catalyzed by yttrium β-diketiminate complexes

The one-pot synthesis of well-defined block copolymers of olefins/1,3-dienes and polar monomers, such as cyclic esters and acrylates has long been the focus of intense research. Cationic alkyl rare earth metal catalysts, activated by organoborates, have shown to be promising for the polymerization of isoprene or styrene and ε-caprolactone. In this study, we synthesize a series of yttrium bis(alkyl) complexes supported by simple β-diketiminate ancillary ligands. Subtle changes have been made to the β-diketiminate ligand framework to elucidate the effect of ligand structure on the rate and selectivity of olefin/1,3-diene and cyclic ester polymerization, with small ligand changes having a large impact on the resulting polymerizations. Generation of the active cationic species was easily streamlined by identification of appropriate catalyst : organoborate ratios, allowing for high catalyst efficiencies. Notably, we demonstrate the first cationic rare earth metal alkyl-initiated polymerization of δ-valerolactone and ε-decalactone as well as introduced five new block copolymer morphologies. In addition, selective degradation of the ester block in poly(isoprene-b-caprolactone) enabled recovery of the polyisoprene block with identical spectroscopic and thermal properties. Significantly, recopolymerization of the recovered poly(1,3-diene) with fresh ε-caprolactone reproduced the desired diblocks with nearly identical thermal and physical properties to those of virgin copolymer, illustrating a plausible recycling scheme for these materials.

Ligand features that promote one-pot block copolymerization of 1,3-dienes and cyclic esters were realized with yttrium β-diketiminate complexes. Depolymerization and repolymerization of the polyester block introduced a plausible recycling strategy.     

Effects of a Volatile Organic Compound Filter on Breath Profiles Measured by Secondary Electrospray High-Resolution Mass Spectrometry

Environmental volatile organic compounds (VOCs) from the ambient air potentially influence on-line breath analysis measurements by secondary electrospray ionization high-resolution mass spectrometry (SESI-HRMS). The aim of this study was to investigate how inhaling through a VOC filter affects the detected breath profiles and whether it is feasible to integrate such filters into routine measurements. A total of 24 adult participants performed paired breath analysis measurements with and without the use of an activated carbon filter for inspiration. Concordance correlation coefficients (CCCs) and the Bland–Altman analysis were used to assess the agreement between the two methods. Additionally, the effect on a selection of known metabolites and contaminants was analyzed. Out of all the detected features, 78.3% showed at least a moderate agreement before and after filter usage (CCC > 0.9). The decrease in agreement of the remaining m/z features was mostly associated with reduced signal intensities after filter usage. Although a moderate-to-substantial concordance was found for almost 80% of the m/z features, the filter still had an effect by decreasing signal intensities, not only for contaminants, but also for some of the studied metabolites. Operationally, the use of the filter complicated and slowed down the conductance of measurements, limiting its applicability in clinical studies.