Hydrodynamic formation of stable anisotropic structures in Couette flow of dilute suspensionFormation hydrodynamique pour structures anisotropiques stables dans un flux de Couette d'une suspension diluée

The problem of rotary motion of rigid axially symmetric elongated particles in the Couette flow of dilute suspension with anisotropic carrier fluid is solved. It is shown that the stable stationary solutions of the dynamical set of ordinary differential equations describing the particles rotary motion are possible in the case of forming the stationary anisotropy in the carrier fluid of the suspension. It allows us to detect the stationary orientation of suspended particles and formation of stable anisotropic liquid-crystalline structures in the considered suspension under the action of hydrodynamic forces. The study of rheological properties of such a structured suspension shows that it behaves as a viscoelastic quasi-Newtonian anisotropic liquid medium. To cite this article: E.Yu. Taran et al., C. R. Mecanique 332 (2004).     

Disentangling of Information About the Structure of Biomolecules Based on the Decomposition and Separation of Two-Dimentional Charge Distributions of Ions

Electrospray ionization mass spectra of biomolecules typically consist of a series of multiply charged ions because of the transfer of protons or other charge carriers between ions of biomolecules and the surrounding liquid or gas. The distribution of intensities of ions retained charge carriers contains information about the spatial structure of biomolecules. A new method is developed for the separation and decomposition of multidimensional charge distributions of ions bearing other charge carriers, such as alkali metal ions, along with protons. The proposed method ensures the estimation of the probability of charge carrier retention by separate functional groups for the selected conformations of biomolecules. The paper describes the application of this method to the analysis of a two-dimensional charge distribution of horse heart cytochrome C, resulting in the revelation of at least two its structural forms under the studied conditions.     

Rheological equations of state of weakly concentrated suspensions of rigid ellipsoidal particles

Rheological equations of state of dilute suspensions of rigid ellipsoidal particles (ellipsoids of revolution) are derived [1–4] from the vantage point of the structural-continuum approach, with attention given both to rotational Brownian motion of particles and to their inertia and the outer force fields. Interaction between particles is ignored in those treatments given the low concentration of the suspended particles. In this paper, the earlier findings [1–4] are generalized to higher concentrations. The effect of hydrodynamical interaction between particles on the rheological behavior of the suspension is treated in the light of the Simha approach [5].Translated from Zhurnal Prikladnoi Mekhaniki i Tekhnicheskoi Fiziki, No. 1, pp. 141–145, January–February, 1973.     

Rheological equations of state of weak solutions of polymers as rigid ellipsoidal macromolecules

Rheological equations of state are obtained for weak solutions of polymers as rigid ellipsoidal macromolecules, taking into account the rotational Brownian motion of the macromolecules, their energy, and the external force fields (electric and magnetic). As an example the effect of the inertia of the macromolecules on the rheological behavior of the solutions is examined.Translated from Zhurnal Prikladnoi Mekhaniki i Tekhnicheskoi Fiziki, No. 2, pp. 125–129, March–April, 1972.     

On the utility of predictive chromatography to complement mass spectrometry based intact protein identification

The amino acid sequence determines the individual protein three-dimensional structure and its functioning in an organism. Therefore, “reading” a protein sequence and determining its changes due to mutations or post-translational modifications is one of the objectives of proteomic experiments. The commonly utilized approach is gradient high-performance liquid chromatography (HPLC) in combination with tandem mass spectrometry. While serving as a way to simplify the protein mixture, the liquid chromatography may be an additional analytical tool providing complementary information about the protein structure. Previous attempts to develop “predictive” HPLC for large biomacromolecules were limited by empirically derived equations based purely on the adsorption mechanisms of the retention and applicable to relatively small polypeptide molecules. A mechanism of the large biomacromolecule retention in reversed-phase gradient HPLC was described recently in thermodynamics terms by the analytical model of liquid chromatography at critical conditions (BioLCCC). In this work, we applied the BioLCCC model to predict retention of the intact proteins as well as their large proteolytic peptides separated under different HPLC conditions. The specific aim of these proof-of-principle studies was to demonstrate the feasibility of using “predictive” HPLC as a complementary tool to support the analysis of identified intact proteins in top-down, middle-down, and/or targeted selected reaction monitoring (SRM)-based proteomic experiments.