Rewiring cellular metabolism for heterologous biosynthesis of Taxol

Abstract

Taxol is one of the anticancer drugs synthesized naturally in the evergreen Taxus brevifolia forest tree belonging to the yew family (Taxaceae) growing on the Pacific. There are reportedly evidence for treating ovarian, breast and lung cancers through this drug given its unique structural and functional features. Extraction of this drug from yew trees bark is one of the most common ways of producing this drug, but 3000 trees are needed to obtain a kilogram of Taxol. Hence, further attention has recently been attracted to the metabolic engineering strategies, including, engineering cellular metabolism of microorganisms and their optimization. Accordingly, the present paper article was aimed to review recent advances in elevating the production and commercialization of Taxol through metabolic engineering techniques.     

Spin Selectivity in Electron Transfer in Photosystem I

Photosystem I (PSI) is one of the most studied electron transfer (ET) systems in nature; it is found in plants, algae, and bacteria. The effect of the system structure and its electronic properties on the electron transfer rate and yield was investigated for years in details. In this work we show that not only those system properties affect the ET efficiency, but also the electrons’ spin. Using a newly developed spintronic device and a technique which enables control over the orientation of the PSI monolayer relative to the device (silver) surface, it was possible to evaluate the degree and direction of the spin polarization in ET in PSI. We find high‐spin selectivity throughout the entire ET path and establish that the spins of the electrons being transferred are aligned parallel to their momenta. The spin selectivity peaks at 300 K and vanishes at temperatures below about 150 K. A mechanism is suggested in which the chiral structure of the protein complex plays an important role in determining the high‐spin selectivity and its temperature dependence. Our observation of high light induced spin dependent ET in PSI introduces the possibility that spin may play an important role in ET in biology.     

Critical behavior of light in mode-locked lasers

Light is shown to exhibit critical and tricritical behavior in passively mode-locked lasers with externally injected pulses. It is a first and unique example of critical phenomena in a one-dimensional many-body light-mode system. The phase diagrams consist of regimes with continuous wave, driven parapulses, spontaneous pulses via mode condensation, and heterogeneous pulses, separated by phase transition lines that terminate with critical or tricritical points. Enhanced non-Gaussian fluctuations and collective dynamics are present at the critical and tricritical points, showing a mode system analog of the critical opalescence phenomenon. The critical exponents are calculated and shown to comply with the mean field theory, which is rigorous in the light system.     

The Piracicaba River basin: isotope hydrology of a tropical river basin under anthropogenic stress

The stable isotope content of samples of precipitation and of the river water throughout the Piracicaba basin in Brazil was measured over a two-year period. The isotope values of precipitation follow a consistent pattern of relatively depleted values of both deuterium and oxygen 18 during the rainy summers and enriched ones during the dry winters, with all values aligned slightly above the Global Meteoric Water Line. The isotopic composition of the river water throughout the basin shows a remarkable spatial coherence and much smaller scatter of data than those of the precipitation. The isotope composition of river water is close to that of the precipitation in the rainy season, however, with a consistent lower d-excess value by 1/1000-2/1000. This is attributed to evaporative water loss in the basin, in part an expression of the recycling of water due to the anthropogenic activity in the region. The more divergent values are recorded during high-water stages in the rivers. In many cases, the floods during the beginning of the rainy season are characterized by an enrichment of the heavy isotopes and lower d-excess values when compared to the precipitation, with the opposite situation later in the rainy season. This is interpreted as resulting from the watershed/riverflow interaction pattern, and it thus suggests that the isotope composition can monitor the hydrologic situation in the basin and its changes.     

Optimal swimming at low Reynolds numbers

Efficient swimming at low Reynolds numbers is a major concern of microbots. To compare the efficiencies of different swimmers we introduce the notion of "a swimming drag coefficient" which allows for the ranking of swimmers. We find the optimal swimmer within a certain class of two-dimensional swimmers using conformal mapping techniques.     

Semiclassical analysis and the magnetization of the Hofstadter model

The magnetization and the de Haas-van Alphen oscillations of Bloch electrons are calculated near commensurate magnetic fluxes. Two phases that appear in the quantization of mixed systems--the Berry phase and a phase first discovered by Wilkinson--play a key role in the theory.     

Invariant measures for the horocycle flow on periodic hyperbolic surfaces

We classify the ergodic invariant Radon measures for the horocycle flow on geometrically infinite regular covers of compact hyperbolic surfaces. The method is to establish a bijection between these measures and the positive minimal eigenfunctions of the Laplacian of the surface. Two consequences arise: if the group of deck transformations G is of polynomial growth, then these measures are classified by the homomorphisms from G ₀ to ℝ where G ₀ ≤ G is a nilpotent subgroup of finite index; if the group is of exponential growth, then there may be more than one Radon measure which is invariant under the geodesic flow and the horocycle flow. We also treat regular covers of finite volume surfaces. The first author was supported by NSF grant 0500630. The second author was supported by NSF grant 0400687.     

Experimental study of the stability and optimization of multipulse passive mode locking

We present an experimental study of the stability of passively mode-locked pulses against noise in multipulse operation of an erbium-doped fiber laser. The laser properties are determined by two dimensionless combinations of the laser parameters. Measurements of the pulses' destabilization threshold as a function of those laser parameters show the optimal regions that maximize the mode-locked pulse stability. We find good agreement between the experimental observations and the theoretical predictions.     

Asymptotic windings of horocycles

Let Γ be a torsion-free hyperbolic group. We study Γ-limit groups which, unlike the fundamental case in which Γ is free, may not be finitely presentable or geometrically tractable. We define model Γ-limit groups, which always have good geometric properties (in particular, they are always relatively hyperbolic). Given a strict resolution of an arbitrary Γ-limit group L, we canonically construct a strict resolution of a model Γ-limit group, which encodes all homomorphisms L → Γ that factor through the given resolution. We propose this as the correct framework in which to study Γ-limit groups algorithmically. We enumerate all Γ-limit groups in this framework.