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1.
Incorporation of FT-IR spectral data in a computer-assisted prediction of globular protein structure
Currently, much effort is being directed to the determination of the three-dimensional structure of proteins. Two classes of research are of interest; spectrometric techniques which include Fourier transform infrared (FT-IR) spectrometry, and non-spectrometric prediction schemes. The spectra obtained using FT-IR spectrometry, are analyzed to determine the percentages of alpha-helices, beta-pleated sheets, and non-structured coils in a protein. Unfortunately, FT-IR, as well as other spectrometric techniques, cannot be used to determine the exact secondary structure of a protein reliably. Non-spectrometric prediction methods yield information on the exact secondary structure, but are not always accurate. Most prediction methods relate the primary amino acid sequence to the secondary structure of a protein, allowing sequential secondary structure information for the protein examined to be obtained. The goal of this research is to incorporate FT-IR with a prediction method, resulting in an improvement in the accuracy of the prediction. 相似文献
2.
We report a theoretical study of phase transition kinetics in confined two-dimensional systems, motivated by recent experimental results on the amorphous-to-crystalline transition in supported, thin amorphous water films [E.H.G. Backus, M.L. Grecea, A.W. Kleyn, and M. Bonn, Phys. Rev. Lett. (to be published)]. We generalize and extend existing theories to simultaneously describe the converted (crystalline) fractions in the bulk, at the sample-vacuum surface, and at the sample-support interface as a function of time. The general approach presented here results in expressions for the time-dependent converted bulk, surface, and interface fractions, for arbitrary desorption rate from the thin film, nucleation and growth rates and also includes finite nucleation grain size. The converted bulk, surface, and interface fractions are calculated for nucleation of the new phase occurring (i) in the bulk, (ii) at the support-sample interface, and (iii) at the sample surface (sample-vacuum interface), resulting in nine expressions. The results demonstrate the advantage of monitoring bulk, surface and interface fractions simultaneously to make definite statements regarding the location of the nucleation, and to reliably determine the values of the relevant crystallization parameters. 相似文献
3.
1,1-Dimethyl-3-phenylpyrazolium-5-oxide (1) was isolated as a minor product (3%) in the reaction of ethyl benzoylacetate with 1,1-dimethylhydrazine and also was obtained as the major product (58%) from the reaction of methyl p-toluenesulfonate with ethyl benzoylacetate dimethylhydrazone. The structural assignment was made on the basis of chemical reactions and spectral data and the formula is represented by a resonance structure for which there are two principal canonical forms. Reaction of 1 with methanol at room temperature afforded methyl benzoylacetate dimethylhydrazone. Ethyl benzoylacetate dimethylhydrazone was shown to exist as a tautomeric mixture containing 65% of the imine form at room temperature. 相似文献
4.
Masakazu Uramoto Kimie Kobinata Kiyoshi Isono Tsutomu Higashijima Tatsuo Miyazawa Ellen E. Jenkins James A. McCloskey 《Tetrahedron》1982,38(11):1599-1608
New chitin synthetase inhibitors, neopolyoxins A, B, and C were isolated from the culture filtrate of Streptomyces cacaoi subsp. asoensis. Their absolute structures have been established on the basis of chemical and spectroscopic evidence. They are structural analogs of the polyoxins. As a nucleobase, neopolyoxin C possesses uracil, while neopolyoxins A and B contain the imidazoline moiety. A ring contraction reaction of pyrimidine nucleoside into imidazoline nucleoside played a key role in the structure determination of the nucleoside moiety. A similar transformation was suggested for the biosynthesis of neopolyoxins A and B. 相似文献
5.
Ellen C. Weaver 《Photochemistry and photobiology》1968,7(1):93-100
Abstract— There is considerable evidence that the light-induced narrow EPR signal I at g = 2·0025 in green algae is a reflection of the turnover of the photosynthetic reaction center, P700. A lag period or induction effect of the formation of this signal, subsequent to a dark period in whole fresh cells, is similar to induction effects for the bleaching of P700. The rate of formation of the signal is slower the longer the preceding dark period. DCMU does not much affect the induction phenomenon, but heating the cells to 60° abolishes it. Some substance or process which exists in the intact cell is altered by light and is detectable by its effect on signal I and on the rate of light-induced oxidation of P700 and cytochrome. 相似文献
6.
Aluminum cans have intermittently been associated with the development of off-flavors in beverages. Certain organic compounds, e.g., aldehydes and ketones, are known to contribute to flavor defects; trans-2-nonenal can be detected at 0.1 μg l?1 levels by trained tasters. In a recent study, the production process used to form two-piece aluminum cans was examined. Samples of aluminum coil stock, partly formed cans and finished cans were obtained from typical production lins and examined by a flavor panel and by chromatographic and spectroscopic methods in an effort to develop routine techniques for monitoring can production. Capillary-column gas chromatography and, after derivatization with dinitrophenylhydrazone, high-performance liquid chromatography are useful for quantifying off-flavor compounds and precursors in lubricants and other materials used in rolling mills and can-making operations, but are not adaptable to on-line monitoring. Correlations between gas-chromatographic data and flavor panel assessments were good. 相似文献
7.
Bjrn E. Berg Ellen M. Hansen Synnve Gjrven Tyge Greibrokk 《Journal of separation science》1993,16(6):358-363
Supercritical carbon dioxide can be utilized both as an introduction solvent in capillary SFC and as a reaction medium; both possibilities are illustrated in this study. An off-line SFE unit was modified for on-line SFE-SFC. To facilitate rapid depressurization of the extraction cell and to prevent memory effects, a 6-port valve was installed at the outlet line of the extraction unit. An increased background signal was obtained when PEEK polymer was used in the construction of the extraction vessel; when stainless steel was used, the blanks improved. The synthesis of methyl esters and butyl esters of fatty acids from triglycerides in edible fat was examined using an immobilized lipase as a catalyst in on-line SFE-SFC. As a result of 30 minutes reaction – extraction time, high yields of fatty acid esters were obtained at a pressure of 150 bar and a temperature of 50°C. 相似文献
8.
Quantum chemical CNDO /2 calculations for the conformational preference of the side chain of thioridazine as a function of angle indicated the crystallographically determined structure gave the lowest energy. There is also a small region of conformational flexibility within the first 90° of rotation of the side chain. This is commensurate with the results which we had obtained previously for our similar calculations for promazine and its Cl and CF3 derivatives, perazine and its Cl and CF3 derivatives, and for the hypothetical hitherto unknown N-piperidinopromazine and its Cl and CF3 derivatives. The conformational profile of thioridazine resembles that of the perazines. The calculated gross atomic populations on the alkyl nitrogen in thioridazine was within the range we had previously found necessary for neuroleptic activity. 相似文献
9.
Hai Pham Tuan Hans-Gerd Janssen Ellen M. Kuiper-van Loo Harm Vlap 《Journal of separation science》1995,18(9):525-534
Determination of trace concentrations of sulfur components in natural gas is a true analytical challenge. Only analytical procedures based on gas chromatography can meet the sensitivity and accuracy requirements dictated by environmental regulation institutions and modern chemical industry. In the present contribution the sample pretreatment and chromatographic separation steps have been evaluated and optimized based on the use of a flamebased sulfur chemiluminescence detector (SCD) for target compound detection. The proposed instrument consists of a programmed temperature vaporizing (PTV) injector employing a liner packed with Chromosorb 104, a 4 μm thick film apolar column and a flame-based SCD. Using a 13 mL sample loop the detection limit achievable with the new method is 3 μg S/m3. The precision of replicate measure. ments is generally in the range of 5–15% relative standard deviation. Lower detection limits can be achieved by preconcentrating larger sample volumes, e.g. 100 mL. 相似文献
10.
Straube EA Dekant W Völkel W 《Journal of the American Society for Mass Spectrometry》2004,15(12):1016-1862
The only relevant source for human exposure to dinitropyrenes is diesel engine emissions. Due to this specificity, dinitropyrenes may be used as biomarkers for monitoring human exposure to diesel engine emissions. Only few analytical methods have been described for the quantitation of dinitropyrenes and their metabolites, aminonitropyrenes, and diaminopyrenes. Therefore, for dinitropyrenes, aminonitropyrenes, and diaminopyrenes were selected as model compounds for the development of a sensitive HPLC-MS/MS method (high performance liquid chromatography coupled to triple quadrupole mass spectrometry) was to quantify polyaromatic amines and nitroarenes in biological matrices was developed optimal methods by comparing electrospray ionization (ESI), atmospheric pressure chemical ionization (APCI), and atmospheric pressure photoionization (APPI) sources. Dinitropyrene was not effectively ionized and diaminopyrene yielded mainly [M(.)](+) ions by electrospray ionization. With APCI and APPI, precursor ions of diaminopyrene and aminonitropyrene were [M + H](+) and [M(.)](-) for dinitropyrene. Precursor ions with [M - 30(.)](-) for dinitropyrene and [M - 30 + H](+) for aminonitropyrene were observed. Reversed and normal phase HPLC-MS/MS with ESI, APCI and APPI were optimized separately with respect to unequivocal analyte identification and sensitivity. Normal phase HPLC coupled to APPI-MS/MS gave the highest precision and sensitivity for aminonitropyrene (6%/0.2 pg on column) and dinitropyrene (9%/0.5 pg on column). The limit of detection in spiked rat plasma was 5 pg/100 microL for aminonitropyrene (accuracy 82%) and 10 pg/100 microL for dinitropyrene (accuracy 105%). In plasma of rats treated with dinitropyrene by oral administration, no detectable levels of dinitropyrene but higher aminonitropyrene levels compared with intratracheal instillation were observed. These findings clearly demonstrate that dinitropyrene was absorbed after oral and intratracheal application and that a reduction of nitro groups occurs to a high extent in the reductive environment of the intestine. To our knowledge, this is the first time that aminonitropyrene was observed in plasma after intratracheal or oral administration directly demonstrating the reductive metabolism of dinitropyrene in vivo. 相似文献