Surface activity of thymol: implications for an eventual pharmacological activity

In the present work, we studied the ability of thymol to affect the organization of model membranes and the activity of an intrinsic membrane protein, the GABA(A) receptor (GABA(A)-R). In this last aspect, we tried to elucidate if the action mechanism of this terpene at the molecular level, involves its binding to the receptor protein, changes in the organization of the receptor molecular environment, or both. The self-aggregation of thymol in water with a critical micellar concentration approximately = 4 microM and its ability to penetrate in monomolecular layers of soybean phosphatidylcholine (sPC) at the air-water interface, even at surface pressures above the equilibrium, lateral pressure of natural bilayers were demonstrated. Thymol affected the self-aggregation of Triton X-100 and the topology of sPC vesicles. It also increased the polarity of the membrane environment sensed by the electrochromic dye merocyanine. A dipolar moment of 1.341 Debye was calculated from its energy-minimized structure. Its effect on the binding of [3H]-flunitrazepam ([3H]-FNZ) to chick brain synaptosomal membranes changed qualitatively from a tendency to the inhibition to a clear activatory regime, up on changing the phase state of the terpene (from a monomeric to a self-aggregated state). Above its CMC, thymol increased the affinity of the binding of [3H]-FNZ (K(d-control)= 2.9, K(d-thymol)= 1.7 nM) without changing the receptor density (B(max-control)= 910, B(max-thymol)= 895 fmol/mg protein). The activatory effect of thymol on the binding of [ [3H]-FNZ was observed even in the presence of the allosteric activator gamma-aminobutyric acid (GABA) at a concentration of maximal activity, and was blocked by the GABA antagonist bicuculline. Changes in the dipolar arrangement and in the molecular packing of GABA(A)-R environment are discussed as possible mediators of the action mechanism of thymol.     

Cloning, Sequencing, and Identification Using Proteomic Tools of a Protease from Bromelia hieronymi Mez

Fruits of Bromelia hieronymi, a tropical South American plant, possess a high content of peptidases with potential biotechnological uses. Total RNA was extracted from unripe fruits and peptidase cDNA was obtained by 3'RACE-PCR. The consensus sequence of the cysteine peptidase cDNA contained 875 bp, the 690 first ones codifying for a hypothetical polypeptide chain of the mature peptidase, named Bh-CP1 (molecular mass 24.773 kDa, pI 8.6, extinction molar coefficient 58,705 M(-1) cm(-1)). Bh-CP1 sequence shows a high percentage of identity with those of other cysteine plant proteases. The presence of highly preserved residues is observed, like those forming the catalytic site (Gln19, Cys25, His159, and Asn175, papain numbering), as well as other six Cys residues, involved in the formation of disulfide bounds. Molecular modeling results suggest the enzyme belongs to the α?+?β class of proteins, with two disulfide bridges (Cys23-Cys63 and Cys57-Cys96) in the α domain, while the β domain is stabilized by another disulfide bridge (Cys153-Cys203). Additionally, peptide mass fingerprints (PMFs) of the three peptidases previously isolated from B. hieronymi fruits (namely hieronymain I, II, and III) were performed and compared with the theoretical fingerprint of PMF of Bh-CP1, showing a partial matching between the in silico-translated protein and hieronymain II.     

Selection of phage-displayed antibodies with high affinity and specificity by electrophoresis in microfluidic devices

A method development aimed for high-throughput and automated antibody screening holds great potential for areas ranging from fundamental molecular interactions to the discovery of novel disease markers, therapeutic targets, and monoclonal antibody engineering. Surface display techniques enable efficient manipulation of large molecular libraries in small volumes. Specifically, phage display appeared as a powerful technology for selecting peptides and proteins with enhanced, target-specific binding affinities. Here, we present a phage-selection microfluidic device wherein electrophoresis was performed under two orthogonal electric fields through an agarose gel functionalized with the respective antigen. This microdevice was capable of screening and sorting in a single round high-affinity phage-displayed antibodies against virus glycoproteins, including human immunodeficiency virus-1 glycoprotein 120 or the Ebola virus glycoprotein (EBOV-GP). Phages were differentially and laterally swept depending on their antigen affinity; the high-affinity phages were recovered at channels proximal to the application site, whereas low-affinity phages migrated distal after electrophoresis. These experiments proved that the microfluidic device specifically designed for phage-selection is rapid, sensitive, and effective. Therefore, this is an efficient and cost-effective method that allowed highly controlled assay conditions for isolating and sorting high-affinity ligands displayed in phages.     

Synthesis and stereoselective evaluation of a (1R)-(–)-myrtenal-derived pseudo C2-symmetric dodecaheterocycle as a potential heterofunctional chiral auxiliary

The synthesis and diastereoselective performance of the pseudo C₂-symmetric dodecaheterocycle 3 in nucleophilic and electrophilic reactions are reported. Compound 3 proved to be a highly diastereoselective template to generate a pair of enantiomeric moieties within its structure in a programmed manner. Hence, this study describes the synthesis of a novel potential heterobifunctional chiral auxiliary.     

Rapid characterisation of agro-industrial effluents for environmental fate by UV–visible and infrared spectroscopy from fractions obtained by centrifugation

Agro-industrial systems (e.g. dairy farms, feed lot, pig breeding and food processing plants) provide large quantity of organic wastes that could be recycled within the productive systems. However, the basic chemical characterisation is not enough to predict the effect that they may generate on the environment. In this study, a centrifugation process was applied at various speeds between 3000 and 15,000 rpm and carried out separately on two different livestock effluents (dairy farm and pig anaerobic digestate), in order to obtain supernatants and precipitates, which were studied separately. The more water soluble fractions, with lighter components and/or simpler structures, remained as liquid supernatants, while the more complex fractions, with higher molecular weight and/or water insoluble fractions, constituted the solid precipitates. An increase in the centrifugation rate did not produce the differential precipitation of dissimilar functional groups. Hence, 5000 rpm was the most adequate velocity since it generated clear supernatants without denaturation of the organic matter. A basic cost-effective chemical analysis, complemented with ultraviolet–visible and Fourier transform infrared spectroscopy, enables a set of properties to be established qualitatively and quickly for the multiple components of the organic matter for its later use as fertilisers or amendments. This rapid and economical technique allows for a characterisation prior to the reuse of the effluents, which is necessary to optimise their application and avoid environmental problems.     

Accurate pressure post-process of a finite element method for elastoacoustics

Summary. This paper deals with a post-process to obtain a more accurate approximation of the fluid pressure from a finite element computation of the vibration modes of a fluid-structure coupled system. The underlying finite element method, based on a displacement formulation for both media, consists of using Raviart-Thomas elements for the fluid combined with standard continuous elements for the solid. An easy to compute post-process of the pressure is derived. The relation between this post-process and an alternative finite element approximation of the problem based on discretizing the fluid pressure by enriched Crouzeix-Raviart elements is studied. Higher order estimates for the L² norm of the post-processed pressure are proved by exploiting this relation. As a by-product, higher order L² estimates for the solid displacements obtained with the original method are also proved.Member of CIC, Provincia de Buenos Aires, ArgentinaMember of CONICET, Argentina. Partially supported by FONDECYT 7.990.075 and FONDAP in Applied Mathematics, ChilePartially supported by FONDECYT 1.990.346 and FONDAP in Applied Mathematics, Chile     

Spectroscopic probing of ortho-nitrophenol localization in phospholipid bilayers

In the present study we estimated the localization of ortho-nitrophenol (ONP) within model membranes through its efficiency to quench and to modify the anisotropy of DPH and TMA-DPH fluorescence. These fluorescent probes are known to sense the hydrocarbon core and the polar head group region of membranes, respectively. TMA-DPH fluorescence in MLVs was more efficiently quenched than DPH (K(q,TMA-DPH)=2.36 and K(q,DPH)=1.07 mM ns(-1)). Moreover, these results demonstrated the interfacial localization of ONP and may contribute to understand membrane-mediated mechanisms of ONP-induced toxicity and the behavior of ONP as a product of several enzymatic reactions occurring in the presence of lipid-water interfaces.