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1.
R. Thomas conjectured, 20 years ago, that the presence of a positive circuit in the interaction graph of a dynamical system is a necessary condition for the presence of several stable states. Recently, E. Remy et al. stated and proved the conjecture for Boolean dynamical systems. Using a similar approach, we generalize the result to discrete dynamical systems, and by focusing on the asynchronous dynamics that R. Thomas used in the course of his analysis of genetic networks, we obtain a more general variant of R. Thomas’ conjecture. In this way, we get a necessary condition for genetic networks to lead to differentiation. 相似文献
2.
Fernaldo Richtia Winnerdy Bla Bakalar Poulomi Das Brahim Heddi Adrien Marchand Frdric Rosu Valrie Gabelica Anh Tun Phan 《Chemical science》2021,12(20):7151
Cations are critical for the folding and assembly of nucleic acids. In G-quadruplex structures, cations can bind between stacked G-tetrads and coordinate with negatively charged guanine carbonyl oxygens. They usually exchange between binding sites and with the bulk in solution with time constants ranging from sub-millisecond to seconds. Here we report the first observation of extremely long-lived K+ and NH4+ ions, with an exchange time constant on the order of an hour, when coordinated at the center of a left-handed G-quadruplex DNA. A single-base mutation, that switched one half of the structure from left- to right-handed conformation resulting in a right–left hybrid G-quadruplex, was shown to remove this long-lived behaviour of the central cation.An extremely long-lived cation has been detected in left-handed G-quadruplexes. 相似文献
3.
The solid-phase synthesis of the octapeptide 1 AcGly-Ala-Lys-Arg-His-Arg-Lys-ValOMe, which represents the fragment 14-21 of the amino acid sequence of the chromosomal histone H4, as well as of the structurally related nonapeptide 2 AcGly-Ala-Lys-Leu-Arg-His-Arg-Lys-ValOMe, is described using a new polyacrylic resin containing a glycolamide ester linkage(resin-NHCO-CH2-OCO-peptide) acting as a labile anchoring moiety between the resin and the peptide.After elongation of the polypeptide chain using classical protecting groups, i.e. t-butyloxycarbonyl for the α-NH2 function, benzyloxycarbonyl, nitro and 2,4-dinitrophenyl groups for the side-chains of Lys, Arg and His respectively, both peptides 1 and 2 were obtained in good yields and with a high purity as shown by high-pressure liquid chromatography, by amino-acid analysis and by high-field proton NMR spectroscopy.This work demonstrates the ability of the newly introduced polyacrylic resin to act as a convenient support for solid-phase peptide synthesis. 相似文献
4.
A family of alkaline earth organosulfonate coordination solids is reported. In contrast to more typical crystal engineering approaches, these solids are sustained by the assembly of building blocks that are coordinatively adaptable rather than rigid in their bonding preferences. The ligand, 4,5-dihydroxybenzene-1,3-disulfonate, L, progressively evolves from a 0D, 1D, 2D, to a 3D microporous network with the Group II cations Mg(2+), Ca(2+), Sr(2+), and Ba(2+), (compounds 1-4), respectively. This trend in dimensionality can be explained by considering factors such as hard-soft acid-base principles and cation radii, a rationalization which follows salient crystal engineering principles. The selective gas sorption properties of the microporous 3D network [Ba(L)(H(2)O)].H(2)O, 4, with different gaseous guests are also presented. 相似文献
5.
There is experimental evidence suggesting that the toxicity of neurodegenerative diseases such as Alzheimer's disease may result from the soluble intermediate oligomers. It is therefore important to characterize extensively the early steps of oligomer formation at atomic level. As these structures are metastable and short lived, experimental data are difficult to obtain and they must be complemented with numerical simulations. In this work, we use the activation-relaxation technique coupled with a coarse-grained energy model to study in detail the mechanisms of aggregation of four lys-phe-phe-glu (KFFE) peptides. This is the shortest peptide known to form amyloid fibrils in vitro. Our simulations indicate that four KFFE peptides adopt a variety of oligomeric states (tetramers, trimers, and dimers) with various orientations of the chains in rapid equilibrium. This conformational distribution is consistent with all-atom molecular-dynamics simulations in explicit solvent and is sequence dependent; as seen experimentally, the lys-pro-gly-glu (KPGE) peptides adopt disordered structures in solution. Our unbiased simulations also indicate that the assembly process is much more complex than previously thought and point to intermediate structures which likely are kinetic traps for longer chains. 相似文献
6.
Characterization of Two Light-Harvesting Subunits Isolated from the Brown Alga Pelvetia canaliculata: Heterogeneity of Xanthophyll Distribution 总被引:1,自引:0,他引:1
Alessandra De Martino Dominique Douady Bernard Rousseau Jean Claude Duval Lise Caron 《Photochemistry and photobiology》1997,66(2):190-197
The main light-harvesting fraction from Pelvetia canaliculata was isolated on a sucrose density gradient from digitonin-solubilized chloroplasts. After further solubilization by dodecyl maltoside, the bulk fraction was separated into two subunits by preparative isoelectric focusing. The more acidic brown fraction was mainly composed of 22 kDa polypeptides having an apparent pI of 4.55. Its pigment composition was very simple, containing chlorophyll (Chi) a, Chi c and fucoxanthin. The in vivo spectral properties of fucoxanthin, namely a shift in light absorption to the green and efficient energy transmission to Chi a, were conserved in this subunit. No xanthophyll associated with photoprotection was found in this band, even when obtained from photoinhibited thalli. The less acidic green band contained predominantly 22 kDa polypeptides that were resolved into numerous components by denaturing isoelectric focusing. Its pigment composition was more complex, containing, in addition, pigments of the so-called xanthophyll cycle. In photoinhibited thalli, about half of the violaxanthin was converted into antheraxanthin and zeaxanthin. All the pigments of the xanthophyll cycle were specifically associated with this subunit, and it may thus have a central role in the thermal dissipation of the absorbed light energy as postulated for light-harvesting complex II isolated from green plants. 相似文献
7.
Jossang A Cavé A Saez J Bartoli MH Cavé A Jossang P 《The Journal of organic chemistry》1996,61(9):3023-3030
Monterine 1 as well as granjine 3, 1R,1'S configured biphenylic bisbenzylisoquinoline alkaloids, generate two highly populated conformers. The interconversion of two forms was detected by saturation tranfer in (1)H NMR NOEs experiments. Tridimensional structure of the conformers was determined on the basis of (1)H NMR analysis of anisotropic shielding protons, by NOEs measurements and vicinal proton coupling constants of CH1-CH(2)alpha and CH1'-CH(2)alpha'. The structures established from NMR data were further refined to observe the mobility of 3D conformations by molecular dynamics simulation in vacuo. The highly populated conformers, monterine 1a and 1b, as well as granjine 3a and 3b, are interconvertible by rotation about the C1'-Calpha', Calpha'-C9', and C11'-C11 bonds and inversion of the benzyl D ring by reference to CH(2)alpha'. The slow exchange system was investigated by dynamic NMR spectroscopy: DeltaG()(c) 77.9 KJ/mol and k(c) 200 s(-)(1) for monterine 1; DeltaG()(c) 77.7 KJ/mol and k(c) 211 s(-)(1) for granjine 3. Natural and synthetic biphenylic bisbenzylisoquinolines displayed, in vitro, cytotoxic activities against human prostate and breast cancer cell lines. 相似文献
8.
9.
J. Douady V. Barone Y. Ellinger R. Subra 《International journal of quantum chemistry》1980,17(2):211-233
A complete development of the PCILO method is presented for the INDO approximation. The introduction of exchange terms in the theoretical treatment is discussed and a detailed analysis of the successive contributions to the total energy is given. The method is applied to various conformational problems (geometry optimization, rotation, and inversion barriers). Its ability to deal with biological systems is tested on the acetylcholine neurotransmitter. Inversion barriers are highly improved with respect to the corresponding CNDO algorithm. A better account of σ-π exchange phenomena can be expected with the presented PCILO -INDO development. 相似文献
10.
Adrien Boussicault Valentin Féray Alain Lascoux Victor Reiner 《Journal of Algebraic Combinatorics》2012,35(4):573-610
The geometric and algebraic theory of valuations on cones is applied to understand identities involving summing certain rational
functions over the set of linear extensions of a poset. 相似文献