New C15 Acetogenins from Two Species of Laurencia from the Aegean Sea

The chemical diversity of the approximately 1,200 natural products isolated from red algae of the genus Laurencia, in combination with the wide range of their biological activities, have placed species of Laurencia in the spotlight of marine chemists’ attention for over 60 years. The chemical investigation of the organic (CH₂Cl₂/MeOH) extracts of Laurencia microcladia and Laurencia obtusa, both collected off the coasts of Tinos island in the Aegean Sea, resulted in the isolation of 32 secondary metabolites, including 23 C₁₅ acetogenins (1–23), 7 sesquiterpenes (24–30) and 2 diterpenes (31 and 32). Among them, six new C₁₅ acetogenins, namely 10-acetyl-sagonenyne (2), cis-sagonenyne (3), trans-thuwalenyne C (4), tinosallene A (11), tinosallene B (12) and obtusallene XI (17), were identified and their structures were elucidated by extensive analysis of their spectroscopic data. Compounds 1–3, 5–11, 13 and 15–32 were evaluated for their antibacterial activity against Staphylococcus aureus and Escherichia coli.     

Differentially Isotope‐Labeled Nucleosomes To Study Asymmetric Histone Modification Crosstalk by Time‐Resolved NMR Spectroscopy

Post‐translational modifications (PTMs) of histones regulate chromatin structure and function. Because nucleosomes contain two copies each of the four core histones, the establishment of different PTMs on individual “sister” histones in the same nucleosomal context, that is, asymmetric histone PTMs, are difficult to analyze. Here, we generated differentially isotope‐labeled nucleosomes to study asymmetric histone modification crosstalk by time‐resolved NMR spectroscopy. Specifically, we present mechanistic insights into nucleosomal histone H3 modification reactions in cis and in trans, that is, within individual H3 copies or between them. We validated our approach by using the H3S10phK14ac crosstalk mechanism, which is mediated by the Gcn5 acetyltransferase. Moreover, phosphorylation assays on methylated substrates showed that, under certain conditions, Haspin kinase is able to produce nucleosomes decorated asymmetrically with two distinct types of PTMs.     

PIV measurements of the asymmetric wake of a two dimensional heaving hydrofoil

Particle image velocimetry is used to examine the flow behind a two-dimensional heaving hydrofoil of NACA 0012 cross section, operating with heave amplitude to chord ratio of 0.215 at Strouhal numbers between 0.174 and 0.781 and a Reynolds number of 2,700. The measurements show that for Strouhal numbers larger than 0.434, the wake becomes deflected such that the average velocity profile is asymmetric about the mean heave position of the hydrofoil. The deflection angle of the wake, which is related to the average lift and drag on the hydrofoil, is found to lie between 13° and 18°. An examination of the swirl strength of the vortices generated by the hydrofoil motion reveal that the strongest vortices, which are created at the higher Strouhal numbers, dissipate most rapidly. This research article was submitted for the special issue on Animal locomotion: The hydrodynamics of swimming (Vol. 43, No. 5).     

Simultaneous detection of protein phosphorylation and acetylation by high-resolution NMR spectroscopy

Post-translational protein modifications (PTMs) such as phosphorylation and acetylation regulate a large number of eukaryotic signaling processes. In most instances, it is the combination of different PTMs that "encode" the biological outcome of these covalent amendments in a highly dynamic and cell-state-specific manner. Most research tools fail to detect different PTMs in a single experiment and are unable to directly observe dynamic PTM states in complex environments such as cell extracts or intact cells. Here we describe in situ observations of phosphorylation and acetylation reactions by high-resolution liquid-state NMR spectroscopy. We delineate the NMR characteristics of progressive lysine acetylation and provide in vitro examples of joint phosphorylation and acetylation events and how they can be deciphered on a residue-specific basis and in a time-resolved and quantitative manner. Finally, we extend our NMR investigations to cellular phosphorylation and acetylation events in human cell extracts and demonstrate the unique ability of NMR spectroscopy to simultaneously report the establishment of these PTMs by endogenous cellular enzymes.     

Octanol/water partitioning simulation by RP‐HPLC for structurally diverse acidic drugs: Comparison of three columns in the presence and absence of n‐octanol as the mobile phase additive

The advantageous effect of n‐octanol as a mobile phase additive for lipophilicity assessment of structurally diverse acidic drugs both in the neutral and ionized form was explored. Two RP C₁₈ columns, ABZ⁺ and Aquasil, were used for the determination of logk_w indices, and the results were compared with those previously reported on a base‐deactivated silica column. At pH 2.5, the use of n‐octanol‐saturated buffer as the mobile phase aqueous component led to high‐quality 1:1 correlation between logk_w and logP for the ABZ⁺ column, while inferior statistics were obtained for Aquasil. At physiological pH, the correlations were significantly improved if strongly ionized acidic drugs were treated separately from weakly ionized ones. In the latter case, 1:1 correlations between logD_7.4 and logk_w^oct indices were obtained in the presence of 0.25% n‐octanol. Concerning strongly ionized compounds, adequate correlations were established under the same conditions; however, slopes were significantly lower than unity, while large negative intercepts were obtained. According to the absolute difference (diff = logD_7.4–logk_w) pattern, base‐deactivated silica showed a better performance than ABZ⁺, however, the latter seems more efficient for the lipophilicity assessment of highly lipophilic acidic compounds. Aquasil may be the column of choice if logD_7.4<3 with the limitation, however, that very hydrophilic compounds cannot be measured.     

Octanol/water partitioning simulation by reversed-phase high performance liquid chromatography for structurally diverse acidic drugs: Effect of n-octanol as mobile phase additive

The role of n-octanol as mobile phase additive for the lipophilicity assessment of 45 structurally diverse acidic drugs both at neutral (pH 2.5) and ionized form (pH 7.4) was investigated. Extrapolated retention factors logk(w) were determined on a BDS C18 column using methanol as organic modifier and different amounts of n-octanol as mobile phase additive. For more polar compounds, the effect of n-octanol in retention was found to decrease as their lipophilicity increased. In the case of carboxylic acids and oxicams, the differentiation in retention, in presence and absence of n-octanol, could be further attributed to the attenuation of polar interactions, concerning mainly hydrogen bonding. At pH 2.5, the use of n-octanol saturated buffer, without further addition of n-octanol in the mobile phase, led to 1:1 correlation with logP. At physiological pH, 1:1 correlation was obtained between logD(7.4) and logk(w)(oct) indices upon addition of 0.25% n-octanol, in the case of weak acids. For strongly ionized compounds, a good correlation was also established under the same conditions. The corresponding equation, however, possessed a large negative intercept and a slope lower than unity.     

Dual-plane PIV technique to determine the complete velocity gradient tensor in a turbulent boundary layer

Simultaneous dual-plane PIV experiments, which utilized three cameras to measure velocity components in two differentially separated planes, were performed in streamwise-spanwise planes in the log region of a turbulent boundary layer at a moderate Reynolds number (Re 1100). Stereoscopic data were obtained in one plane with two cameras, and standard PIV data were obtained in the other with a single camera. The scattered light from the two planes was separated onto respective cameras by using orthogonal polarizations. The acquired datasets were used in tandem with continuity to compute all 9 velocity gradients, the complete vorticity vector and other invariant quantities. These derived quantities were employed to analyze and interpret the structural characteristics and features of the boundary layer. Sample results of the vorticity vector are consistent with the presence of hairpin-shaped vortices inclined downstream along the streamwise direction. These vortices envelop low speed zones and generate Reynolds shear stress that enhances turbulence production. Computation of inclination angles of individual eddy cores using the vorticity vector suggests that the most probable inclination angle is 35° to the streamwise-spanwise plane with a resulting projected eddy inclination of 43° in the streamwise-wall-normal plane.

---