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排序方式: 共有113条查询结果,搜索用时 187 毫秒
1.
Libera JA Cheng H Olvera de la Cruz M Bedzyk MJ 《The journal of physical chemistry. B》2005,109(48):23001-23007
We show an experimental approach for directly observing the condensation of polynucleotides and their electrolyte counterions at a liquid/solid interface. X-ray standing waves (XSW) generated by Bragg diffraction from a d = 20 nm Si/Mo multilayer substrate are used to measure the distinct distribution profiles of the polyanions and simple cations along the surface normal direction with subnanometer resolution. The 1D spatial sensitivity of this approach is enhanced by observing the XSW induced fluorescence modulations over multiple orders of Bragg peaks. We study the interesting divalent cation driven adsorption of anionic polynucleotides to anionic surfaces by exposing a hydroxyl-terminated silica surface to an aqueous solution with ZnCl2 and mercurated poly-uridylic acid (a synthetic RNA molecule). The in situ long-period XSW measurements are used to follow the evolution of both the Zn and Hg distribution profiles during the adsorption process. The conditions and physical mechanisms that govern the observed divalent cation adsorption and subsequent polynucleotide adsorption to an anionic surface are explained by a thermodynamic model that incorporates nonlinear electrostatic effects. 相似文献
2.
Molecular dynamics simulation of DNA‐directed assembly of nanoparticle superlattices using patterned templates 下载免费PDF全文
S. Pan T. I. N. G. Li M. Olvera de la Cruz 《Journal of Polymer Science.Polymer Physics》2016,54(17):1687-1692
DNA‐directed assembly is a well developed approach in constructing desired nano‐architectures. On the other hand, E‐beam lithography is widely utilized for high resolution nano‐scale patterning. Recently, a new technique combining these two methods was developed to epitaxially grow DNA‐mediated nanoparticle superlattices on patterned substrates. However, defects are observed in epitaxial layers which restricts this technique from building large‐scale superlattices for real applications. Here we use molecular dynamics simulations to study and predict defect formation on adsorbed superlattice monolayers. We demonstrate that this epitaxial growth is energetically driven by maximizing DNA hybridization between the epitaxial layer and the substrate and that the shape anisotropy of the DNA‐mediated template posts leads to structural defects. We also develop design rules to dramatically reduce defects on epitaxial layers. Ultimately, with the assist of the computational study, this technique will open the door to constructing well‐ordered, three‐dimensional novel nanomaterials. © 2016 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2016 , 54, 1687–1692 相似文献
3.
4.
González-Mozuelos P Yeom MS Olvera de la Cruz M 《The European physical journal. E, Soft matter》2005,16(2):167-178
We study small rod-like molecular electrolytes solutions with
their corresponding atomic counterions. The asymptotic length
scales (decay length and wavelength) of the structural
correlations are analyzed using the formalism of the dressed
interaction site theory (DIST). The correlation functions are
determined using the reference interaction site model equation
complemented with a mixed approach in which the hypernetted-chain
closure is used for the repulsive interactions, and the mean
spherical approximation is used for the attractive interactions.
The results from this scheme are in good agreement with the Monte
Carlo computer simulations reported here. The asymptotic
properties of the correlation functions of this molecular system
are compared against those corresponding to two related simple
(atomic) electrolyte models. The main conclusion is that the
molecular structure of the ions lowers by two orders of magnitude
the concentration at which the transition from monotonic to
oscillatory decay occurs. 相似文献
5.
6.
We analyze phase separation in ternary systems in the asymptotic hydrodynamic regime when the volume fractions and concentrations are constant. The multiphase Navier-Stokes equations are solved using a level set method. A new projection method was developed to treat multiple junctions for systems with more than two phases. It is found that surface tension ratios can alter the growth mechanism of a minority phase in the presence of two majority phases. When the minority phase wets the interface of the majority phases the domain growth rate of all three phases is initially similar to that of a symmetric binary fluid but slows down at later times. 相似文献
7.
We consider a mixture of two immiscible oppositely charged molecules strongly adsorbed to an interface, with a neutral nonselective molecular background. We determine the coexistence between a high density ionic periodic phase and a dilute isotropic ionic phase. We use a strong segregation approach for the periodic phase and determine the one-loop free energy for the dilute phase. Lamellar and hexagonal patterns are calculated for different charge stoichiometries of the mixture. Molecular dynamics simulations exhibit the predicted phase behavior. The periodic length scale of the solid phase is found to scale as epsilon/(lB psi3/2), where psi is the effective charge density, lB is the Bjerrum length, and epsilon is the cohesive energy. 相似文献
8.
Bruno MA Trejo SA Avilés FX Caffini NO López LM 《Applied biochemistry and biotechnology》2011,165(2):583-593
Fruits of Bromelia hieronymi, a tropical South American plant, possess a high content of peptidases with potential biotechnological uses. Total RNA was extracted from unripe fruits and peptidase cDNA was obtained by 3'RACE-PCR. The consensus sequence of the cysteine peptidase cDNA contained 875 bp, the 690 first ones codifying for a hypothetical polypeptide chain of the mature peptidase, named Bh-CP1 (molecular mass 24.773 kDa, pI 8.6, extinction molar coefficient 58,705 M(-1) cm(-1)). Bh-CP1 sequence shows a high percentage of identity with those of other cysteine plant proteases. The presence of highly preserved residues is observed, like those forming the catalytic site (Gln19, Cys25, His159, and Asn175, papain numbering), as well as other six Cys residues, involved in the formation of disulfide bounds. Molecular modeling results suggest the enzyme belongs to the α?+?β class of proteins, with two disulfide bridges (Cys23-Cys63 and Cys57-Cys96) in the α domain, while the β domain is stabilized by another disulfide bridge (Cys153-Cys203). Additionally, peptide mass fingerprints (PMFs) of the three peptidases previously isolated from B. hieronymi fruits (namely hieronymain I, II, and III) were performed and compared with the theoretical fingerprint of PMF of Bh-CP1, showing a partial matching between the in silico-translated protein and hieronymain II. 相似文献
9.
Tenorio-Lopez FA Valle Mondragon LD Olvera GZ Torres Narvaez JC Pastelin G 《Natural product research》2006,20(13):1176-1182
Viscum album L. aqueous extract, on the Langendorff isolated and perfused heart model, decreases coronary vascular resistance, when compared to control group (36.00 +/- 2.00 vs. 15.80 +/- 1.96 dyn s cm-5). Our data support the fact that this mechanism involves NOS-2 and NOS-3 overexpression (4.65 and 7.89 times over control, respectively), which is correlated with increases in NO (6.24 +/- 2.49 vs. 147.95 +/- 2.79 pmol) and cGMP production (43.94 +/- 2.00 vs. 74.81 +/- 1.96 pmol mg-1 of tissue), compared to control values. Such an effect is antagonized by gadolinium(III) chloride, L-NAME and ODQ. Therefore, coronary vasodilator effect elicited by V. album L. aqueous extract is mediated by the NO/sGC pathway. 相似文献
10.
We study a family of directed random graphs whose arcs are sampled independently of each other, and are present in the graph with a probability that depends on the attributes of the vertices involved. In particular, this family of models includes as special cases the directed versions of the Erd?s‐Rényi model, graphs with given expected degrees, the generalized random graph, and the Poissonian random graph. We establish a phase transition for the existence of a giant strongly connected component and provide some other basic properties, including the limiting joint distribution of the degrees and the mean number of arcs. In particular, we show that by choosing the joint distribution of the vertex attributes according to a multivariate regularly varying distribution, one can obtain scale‐free graphs with arbitrary in‐degree/out‐degree dependence. 相似文献