Environmental effects on hydrogen bonded systems: A quantum chemical study of proton relay model systems

In this paper an application of a reaction field theory of solvent effects has been made to study proton transfer mechanisms in hydrogen bonded systems coupled to an environment. The latter is simulated with reaction fields having variable strength and direction (defined with respect to the supermolecule's total dipole moment direction), together with superposed uniform external electric fields. Changes in proton potential curves and some other properties of a model water dimer and a water trimer are reported. The results are discussed in relation to relevant phenomena in biology and biochemistry, namely proton relay systems in enzymatic catalysis.     

Structure cristalline de SmZrF7. Relations structurales avec le type ReO3

The crystal structure of the fluorozirconate SmZrF₇ has been determined from single crystal X-ray data; the final R value is 0.028. In this compound, isotypic with all the fluorozirconates LnZrF₇ (Ln = rare earth), the symmetry of the cell is monoclinic (space group: P₂₁). The Zr atoms are surrounded by six fluorine atoms forming an almost perfect octahedron: the average distance ZrF is 2.006 Å. The Sm atoms are surrounded by a 8 fluorine atoms polyhedron, the distances SmF lie from 2.221 to 2.411 Å. The association of these two polyhedra by sharing corner forms slabs with an approximately ReO₃ type arrangement: the thickness of the slabs is two octahedra.These slabs with the composition M₂X₇ are held together so that the top fluorine atoms at the surface of a slab increase the coordination of the Sm atom of an adjacent slab. This MX_3.5 phase corresponds to a new structural type between MX₃ (ReO₃ type) and MX₄ (SnF₄ type).     

Some theoretical studies on hydrogen molecule capture by platinum atoms

Pseudopotential SCF-LCAO-MO and variational and perturbative Cl calculations were carried out for H₂ molecule capture by a single Pt atom with C_2v symmetry. A pseudopotential for the platinum atom including relativistic effects was used. Singlet and triplet states of the Pt-H₂ interaction having different representations of the mentioned C_2v symmetry were studied. The triplet ground state of Pt leads to two A₁ and B₂ states in which the metal atom cannot capture H₂; i.e., both have repulsive interaction energies. The electronic state responsible for the capture of H₂ is the closed-shell, singlet A₁ excited state. The equilibrium geometry of the system is reached with a broken H? H bond at a HPtH angle of about 100°. Additionally another shallower minimum for a singlet A₁ linear structure is observed. Specific predictions for the thermal and photochemical Pt + H₂ reactions that can be carried out under matrix isolation conditions are made.     

A structural study of a nonstoichiometric niobium-zirconium oxyfluoride with the ReO3 type structure

Within the ZrNbOF quaternary system a nonstoichiometric compound of the ReO₃ structure is formed with composition limits given by MX_2.9MX_3.14. Crystals at the lower end of this range with a composition of Nb_0.55Zr_0.45O_1.1F_1.8 (MX_2.9) have been investigated by optical and electron microscopy and by powder and single crystal X-ray diffraction in order to determine the mode by which the nonstoichiometry has been accommodated in the structure. It was found that the material does not contain crystallographic shear planes or have a perovskite bronze type of structure but contains vacancies in the anion lattice. It seems likely that these defects are associated into clusters with a definite structure rather than being isolated from each other.     

Designed helical peptides inhibit an intramembrane protease

gamma-Secretase cleaves the transmembrane domain of the amyloid precursor protein, a process implicated in the pathogenesis of Alzheimer's disease, and this enzyme is a founding member of an emerging class of intramembrane proteases. Modeling and mutagenesis suggest a helical conformation for the substrate transmembrane domain upon initial interaction with the protease. Moreover, biochemical evidence supports the presence of an initial docking site for substrate on gamma-secretase that is distinct from the active site, a property predicted to be generally true of intramembrane proteases. Here we show that short peptides designed to adopt a helical conformation in solution are inhibitors of gamma-secretase in both cells and enzyme preparations. Helical peptides with all d-amino acids are the most potent inhibitors and represent potential therapeutic leads. Subtle modifications that disrupt helicity also substantially reduce potency, suggesting that this conformation is critical for effective inhibition. Fluorescence lifetime imaging in intact cells demonstrates that helical peptides disrupt binding between substrate and protease, whereas an active site-directed inhibitor does not. These findings are consistent with helical peptides interacting with the initial substrate docking site of gamma-secretase, suggesting a general strategy for the development of potent and specific inhibitors of intramembrane proteases.     

The formylation of the upper-rims of thiacalixarenes: synthesis of the first tetra-formylated and the first meta-substituted thiacalix[4]arenes

The conventional Gross reaction for the formylation of the tetrapropoxythiacalix[4]arene using TiCl₄ affords the 18-(chloromethyl)-28-hydroxy-25,26,27-tripropoxythiacalix[4]arene substituted in the meta-position of the macrocycle. The p-tetraformyl-tetrapropoxythiacalix[4]arene, which is an interesting intermediate to the upper-rims functionalization of thiacalixarenes, was prepared with a very good yield using BuLi and N-formylpiperidine.     

qNMR for profiling the production of fungal secondary metabolites

Analysis of complex mixtures is a common challenge in natural products research. Quantitative nuclear magnetic resonance spectroscopy offers analysis of complex mixtures at early stages and with benefits that are orthogonal to more common methods of quantitation, including ultraviolet absorption spectroscopy and mass spectrometry. Several experiments were conducted to construct a methodology for use in analysis of extracts of fungal cultures. A broadly applicable method was sought for analysis of both pure and complex samples through use of an externally calibrated method. This method has the benefit of not contaminating valuable samples with the calibrant, and it passed scrutiny for line fitting and reproducibility. The method was implemented to measure the yield of griseofulvin and dechlorogriseofulvin from three fungal isolates. An isolate of Xylaria cubensis (coded MSX48662) was found to biosynthesize griseofulvin in the greatest yield, 149 ± 8 mg per fermentation, and was selected for further supply experiments. Copyright © 2016 John Wiley & Sons, Ltd.     

Rheological Behavior and Non-enzymatic Degradation of a Sulfated Galactan from Halymenia durvillei (Halymeniales, Rhodophyta)

The rheological behavior of a sulfated galactan extracted from Halymenia durvillei, a red seaweed collected in the coastal waters of a small island of Madagascar (Nosy-be in Indian Ocean), was investigated in dilute and semi-dilute solutions. In dilute solution with NaCl at 0.3?M, the polysaccharide adopted a coil conformation whereas, at higher concentrations, the polymer had the behavior of shear-thinning fluid, typical of polymer with high molar mass or semi-rigid conformation. Degradations of this lambda carrageenan-like, using radical depolymerization, and high-pressure homogenization led to several samples of various and controlled molar masses. The measure of their intrinsic viscosities permitted the determination of the relationship of Mark?CHouwink?CSakurada.     

Highly efficient metal‐free organic catalysts to design new Environmentally‐friendly starch‐based blends

A one‐step process is reported to directly synthesize blends of poly(trimethylene carbonate) (PTMC) with a modified granular starch. Trimethylene Carbonate (TMC) ring‐opening polymerization is performed in the presence of native starch particles in bulk conditions at 150 °C and the efficiency of metal‐free organic catalysts (TBD and phosphazene superbases P1‐t‐Oct, P2‐t‐bu, and P4‐t‐bu) are investigated to replace the organo‐metallic stannous octanoate initiator. TMC monomer is successively converted into PTMC and the robustness of organic catalysts is highlighted with significant activities at very low concentrations (<100 ppm), where stannous octanoate is inefficient. Reactivity of starch toward TMC ROP is deeply investigated by NMR techniques and a starch‐graft‐PTMC is indirectly evidenced. Starch substitution degree reaches 0.9% indicating that PTMC grafting only occurs at the surface of swollen granular starch. PTMC graft length from the starch surface remained low in the range 2–12 and model ROP reactions highlight the role of TMC hydrolysis on PTMC graft length. Despite low PTMC grafts, a fine dispersion of intact starch particles into the PTMC matrix is evidenced. Consequently, metal‐free organic catalysts at low concentrations are promising candidates for synthesizing blends of PTMC with high loadings of surface‐modified starch (32% by weight) in 2 min within a one‐step process. © 2013 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2014 , 52, 493–503