Physicochemical and structural properties of bacteriostatic sulfonamides: Theoretical study

A theoretical study at the Hartree–Fock and density functional theory levels is performed on sulfonamide‐type bacteriostatic compounds with the aim to provide an insight into their structure–activity relationship. The basicity of the p‐amino group is analyzed by means of the proton affinities and the protonation energies, showing that molecules presenting bacteriostatic activity are less basic, i.e., they are characterized by larger protonation energies and smaller proton affinities. The acidity of the amide group is analyzed through the deprotonation energy. The results reveal that the more acidic molecules present a larger bacteriostatic activity. This result is also confirmed from a study of bond orders. A bond order analysis of the amide group suggests that the electron attracting group in these molecules is responsible for the increase in acidity. The charge of the SO₂ group is also shown to be affected by the presence of the electron attracting group and consequently related to the acidity of the molecules. A geometric analysis shows that structures in which the amino group is more coplanar with respect to the benzenic ring possess larger bacteriostatic activity. A conformational analysis of these molecules illustrates that active molecules have relatively larger torsion energy barriers. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem 94: 165–172, 2003     

Enantiomeric resolution of underivatized small peptides by HPLC with a chiral crown ether stationary phase

Factors influencing the stereoisomeric resolution of underivatized dipeptides and a representative tripeptide on Crownpak (CR) columns have been investigated. The elution order and relative retention suggest that a combination of chiral, steric, and hydrophobic interactions effects the extent of chiral recognition and the retention achieved during separations. Some dipeptides whose amine terminus is located three atoms from the asymmetric center (such as dipeptides of D ,L -glycine) were resolved, but the elution order was the opposite of that expected for the type of Crownpak column used (CR(+)). Peptides containing hydrophobic substituents were strongly retained, but their retention times could be significantly reduced, and detectability improved, by use of gradient elution. Analysis of a commercial sample of D ,L -leucine-D ,L -alanine revealed the stereoisomers to be present in an unexpected quantitative ratio and demonstrated the utility of these separations for quality assurance and quantitative analyses.     

Automatic generation of linear programming problems for computer aided instruction

The paper presents a method for generating random linear programming problems with a previously selected type of solution. The user can choose a problem whose solution is unbounded, bounded for minima, maxima or both, unique or multiple, with given structure, at wish. Initially, the feasible solution of the LPP is generated as the sum of a linear space, a cone, and a polytope, depending on the desired properties of the solution. With the aim of obtaining a simple set of constraints, the generators of these three structures are selected as random vectors with integer simple components, the range of which can be given. Next, an objective function that satisfies the required conditions, i.e. leads to a solution of the desired type, is obtained. The generating algorithms have been implemented in Mathematica and some illustrative examples are given to clarify the generation process. With this tool, a LPP can be generated, according to the instructor requirements, where this is a human or an expert system. They can control student progress and generate a sequence of problems covering all possible cases, in steps of increasing difficulty. Combining this tool with another (also produced by the same authors) that solves the problems and explains the whole process, step by step, a computer aided module for learning LPP, which is completely autonomous, can be easily obtained.     

Luminescent Graphene-Based Materials via Europium Complexation on Dipyridylpyridazine-Functionalized Graphene Sheets

Graphene-based materials exhibit outstanding physical properties and so are potentially applicable in a great variety of fields. Unlike their corresponding oxides, graphite and graphene are not prone to functionalization. Diels–Alder reactions are among the scarce reactions that they can occur without disrupting their conjugated sp² systems. Herein, the reaction between graphite and 3,6-di(2-pyridyl)-1,2,4,5-tetrazine under different conditions affords several graphene-based materials consisting of dipyridylpyridazine-functionalized few-layer graphene, multilayer graphene and graphite, the sheets of which act as ligands for the grafting of a europium complex. These three materials show strong red emission under 365 nm UV radiation. Their emitting particles can be visualized by confocal microscopy. The rich coordination chemistry of dipyridylpyridazine ligands has potential novel properties for similarly functionalized graphene-based materials grafted with other metal complexes.     

Titanium dioxide doped with transition metals (MxTi1?xO2, M: Ni, Co): synthesis and characterization for its potential application as photoanode

This study presents the synthesis of TiO₂ doped with different amounts of Co and Ni, starting from a simple metallic titanium powder. A successful electrophoretic deposition of these materials on ITO electrodes was achieved for its potential application as photoanodes. EDX, diffuse reflectance UV–Vis spectroscopy, and XRD measurements gave information on the chemical composition of the material and the location of the Ni or Co within the crystal structure of TiO₂. Raman spectroscopy suggests that for a higher content of doping metal above a defined percentage, the formation of metal oxide is promoted. A preliminary study of photoelectrocatalytic orange dye degradation shows higher color removal efficiency as compared to the commercial TiO₂ material.     

2-Pyridyl-benzimidazole-Pd(II)/Pd(0) Supported on Magnetic Mesoporous Silica: Aerobic Oxidation of Benzyl Alcohols/Benzaldehydes and Reduction of Nitroarenes

Catalysis Surveys from Asia - 2-(2-Pyridyl)benzimidazole (PyBzIm) was supported onto magnetic mesoporous silica, Fe3O4@SiO2@SBA-15 via the click chemistry. The supported ligand was treated with...     

Kinetics of amide and peptide cleavage by alkaline hydrogen peroxide

The hydroperoxide anion cleaves unactivated amides and peptides although it is completely unreactive toward ethyl esters. The cleavage by HO2(-) proceeds faster than by OH(-) and involves additional routes with general acid assistance by H2O2 and general base assistance by OH(-) and HO2(-). Cleavage of polypeptides occurs at the N-terminal peptide bond. [reaction: see text]     

Refinement of modelled structures by knowledge-based energy profiles and secondary structure prediction: Application to the human procarboxypeptidase A2

Knowledge-based energy profiles combined with secondary structure prediction have been applied to molecular modelling refinement. To check the procedure, three different models of human procarboxypeptidase A2 (hPCPA2) have been built using the 3D structures of procarboxypeptidase A1 (pPCPA1) and bovine procarboxypeptidase A (bPCPA) as templates. The results of the refinement can be tested against the X-ray structure of hPCPA2 which has been recently determined. Regions miss-modelled in the activation segment of hPCPA2 were detected by means of pseudo-energies using Prosa II and modified afterwards according to the secondary structure prediction. Moreover, models obtained by automated methods as COMPOSER, MODELLER and distance restraints have also been compared, where it was found possible to find out the best model by means of pseudo-energies. Two general conclusions can be elicited from this work: (1) on a given set of putative models it is possible to distinguish among them the one closest to the crystallographic structure, and (2) within a given structure it is possible to find by means of pseudo-energies those regions that have been defectively modelled.     

Tunnel effect in proton transfer

Semiempirical computations were carried out to determine the tunneling rates in the case of coupled motion of two protons along the reaction coordinate. The following molecular systems were studied for medium intermolecular distances (A—B = 2.72 or 2.75 Å); ⁺AH—BH—A, where A was NH₃ or H₂O and BH was HF or H₂O. In the cases where the bridge was HF, solvation was modeled with just one water molecule attached to each side of the perpendicular axis through HF at 2.75 Å. Coupled motion of three protons was also included in the case of H₃O—H₂O—H₂O—H₂O.     

Jensen-Tsallis divergence and atomic dissimilarity for ionized systems in conjugated spaces

A generalization of the original Jensen-Shannon divergence (JSD) is presented in this work, which gives rise to a non-extensive one-parameter divergence providing a powerful dissimilarity measure between electronic distributions. The analysis performed in this study employs the JTD measure to compare one-particle densities of neutral and ionized atomic systems, that generalizes and improves some previous results based on other measures of divergence. Such an improvement mainly arises from the capability of JTD to modify, by means of its order parameter, the relative contribution of specific relevant regions of the atomic densities under comparison, in both position and momentum spaces. Relevant information of the ionization processes attending to structural pattern and periodicity is found, as well as the strong correlation between extremal values of the neutral-cation JTD and those of the atomic ionization potential. Similar conclusions are obtained from processes involving an anion. The analysis includes a study of the dependence of JTD on its order for fixed atomic couples.