Site-selective RNA cleavage by DNA bearing a base pair-mimic nucleoside

We have synthesized the deoxyadenosine derivative tethering a phenyl group (X), which mimics the Watson-Crick A/T base pair. The RNA/DNA hybrid duplexes containing X in the middle of the DNA sequence showed a similar thermal stability regardless of the ribonucleotide species (A, G, C, or U) opposite to X, probably because of the phenyl group stacking inside of the duplex accompanied by the opposite ribonucleotide base flipped in an extrahelical position. The RNA strand hybridized with the DNA strand bearing X was cleaved on the 3'-side of the ribonucleotide opposite to X in the presence of MgCl2, and the RNA sequence to be cleaved was not restricted. The site-specific RNA hydrolysis suggests that the DNA strand bearing X has the advantage of the site-selective base flipping in the target sequence and the development of a "universal deoxyribozyme" to exclusively cleave a target RNA sequence.     

Fundamental equilibrium analysis on the ion-pair extraction of dibenzo-18-crown-6 complex of alkali metal ions with picrate ion into 1,2-dichloroethane

The ion-pair extraction equilibria of dibenzo-18-crown-6 (DB18C6) complexes of Na⁺, K⁺, Rb⁺ and Cs⁺ (M⁺) with picrate ion (Pic⁻) into 1,2-dichloroethane (1,2-DCE) have been studied at 25.0°C. In the case of the Rb⁺ and Cs⁺ systems, the extraction results were interpreted by taking into consideration the formation of a (DB18C6)₂ -M⁺ complex in 1,2-DCE. The thermodynamic constants of extraction, , and ion-pair formation in 1,2-DCE, , of ion pairs of the DB18C6-M⁺ complexes with Pic⁻ were determined. By using the distribution coefficient of M⁺·Pic⁻ the thermodynamic formation constants of the DB18C6-M⁺ complexes in 1,2-DCE, , were evaluated. Consequently the component equilibrium constants of the ion-pair extraction were completely determined and a contribution of these constants to the difference of value was discussed. The value in 1,2-DCE is quite high compared with that in solvating solvents and log decreases linearly with increasing Gutmann donor number of solvents.     

Formation Thermodynamics of Binary and Ternary Lanthanide(III) Complexes with 1,10-Phenanthroline and Chloride in N,N-Dimethylformamide

Formation thermodynamics of binary and ternary lanthanide(III) (Ln = La, Ce, Nd, Eu, Gd, Dy, Tm, Lu) complexes with 1,10-phenanthroline (phen) and the chloride ion have been studied by titration calorimetry and spectrophotometry in N,N-dimethyl-formamide (DMF) containing 0.2 mol-dm^–3 (C₂H₅)₄NClO₄ as a constant ionic medium at 25°C. In the binary system with 1,10-phenanthroline, the Ln(phen)³⁺ complex is formed for all the lanthanide(III) ions examined. The reaction enthalpy and entropy values for the formation of Ln(phen)³⁺ decrease in the order La > Ce > Nd, then increase in the order Nd < Eu < Gd < Dy, and again decrease in the order Dy > Tm > Lu. The variation is explained in terms of the coordination structure of Ln(phen)³⁺ that changes from eight to seven coordination with decreasing ionic radius of the metal ion. In the ternary Ln³⁺-Cl^–-phen system, the formation of LnCl(phen)²⁺, LnCl₂(phen)⁺, and LnCl₃(phen) was established for cerium(III), neodymium(III), and thulium(III), and their formation constants, enthalpies, and entropies were obtained. The enthalpy and entropy values are also discussed from the structural point of view.     

Synthesis of conjugated oligomers having aromatic and enediyne units alternately in the backbone that show intense fluorescence emission

[structure: see text] Synthesis and fluorescence properties of pi-conjugated compounds having alternately an aromatic ring such as benzene, pyridine, and thiophene and an enediyne unit in the backbone are described.     

Raman spectroscopic studies on methane + tetrafluoromethane mixed-gas hydrate system

Raman spectra of intramolecular vibration mode for each guest species in the methane + tetrafluoromethane (CF₄) mixed-gas hydrate crystal have been measured at 291.1 K. Both of pure guest species generate the structure-I hydrate in the present pressure ranges. Isothermal phase-equilibrium curve exhibits two discontinuous points around the equilibrium methane compositions (water-free) in the gas phase of 0.3 and 0.8. At the above points, the Raman spectra of both guest molecules have been drastically changed. One of the most important findings is that the crystal of methane + tetrafluoromethane mixed-gas hydrate shows the structural phase-transition (from the structure-I to the structure-II and back to the structure-I) caused by composition changes.     

Synthesis and properties of hyperbranched poly(ether sulfone)s prepared by self‐polycondensation of novel AB2 monomer

Hyperbranched poly(ether sulfone)s were prepared by the self‐polycondensation of the novel AB₂ monomer, 4‐(3,5‐hydroxyphenoxy)‐4′‐fluorodiphenylsulfone. The high‐molecular‐weight polymers were isolated in good yields. The degree of branching (DB) of the resulting polymers was investigated by the preparation of dendritic and linear model compounds. The DB determined by gated decoupling ¹³C NMR measurements was in the range 0.17–0.41 and was dependent on the base used for the self‐polycondensation. It was found that cesium fluoride was an effective base to form the polymer having the DB of 0.41. The resulting hyperbranched poly(ether sulfone)s showed good solubility in organic solvents. The solubility and the glass transition temperature of the polymers were influenced by the terminal functional groups. The unique thermal crosslinking phenomenon was observed during the DSC measurements of the hydroxyl‐terminated hyperbranched poly(ether sulfone) under air condition. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

Determination of zinc in marine/lacustrine sediments by graphite furnace atomic absorption spectrometry using Pd/Mg chemical modifier and slurry sampling

Effectiveness of Pd/Mg chemical modifier for the accurate direct determination of zinc in marine/lacustrine sediments by graphite furnace atomic absorption spectrometry (GF-AAS) using slurry samples was evaluated. A calibration curve prepared by aqueous zinc standard solution with addition of Pd/Mg chemical modifier is used to determine the zinc concentration in the sediment. The accuracy of the proposed method was confirmed using Certified Reference Materials, NMIJ CRM 7303-a (lacustrine sediment) from National Metrology Institute of Japan, National Institute of Advanced Industrial Science and Technology, Japan, and MESS-3 (marine sediment) and PACS-2 (marine sediment) from National Research Council, Canada. The analytical results obtained by employing Pd/Mg modifier are in good agreement with the certified values of all the reference sediment materials. Although for NRC MESS-3 an accurate determination of zinc is achieved even without the chemical modifier, the use of Pd/Mg chemical modifier is recommended as it leads to establishment of a reliable and accurate direct analytical method. One quantitative analysis takes less than 15 minutes after we obtain dried sediment samples, which is several tens of times faster than conventional analytical methods using acid digested sample solutions. The detection limits are 0.13?µg?g^?1 (213.9?nm) and 16?µg?g^?1 (307.6?nm), respectively, in sediment samples, when 40?mg of dried powdered samples are suspended in 20?mL of 0.1?mol?L^?1 nitric acid and a 10?µl portion of the slurry sample is measured. The precision of the proposed method is 8–15% (RSD).     

Vanadium-catalyzed green oxidation of benzylic alcohols in water under air atmosphere

The oxidation of alcohols using catalytic amounts of metal complexes is highly attractive from the viewpoint of green chemistry principles. However, examples of metal complex-catalyzed oxidations of alcohols with O₂ using water as the solvent are still rare, and precious metals, high-pressure O₂ or air, and a stoichiometric amount of base are often required. In this study, it was found that an oxovanadium-4,4′-t-Bubpy (4,4′-di-tert-butyl-2,2′-bipyridyl) complex exhibited high catalytic activity in the oxidation of benzhydrols under an atmosphere of O₂ in water as the sole solvent. Interestingly, this catalytic oxidation method could be applied to the gram-scale aerobic oxidation of alcohols in water under the atmosphere.     

Rhenium complex-catalyzed coupling reaction of enol acetates with alcohols

The reaction of enol acetates with alcohols in the presence of a catalytic amount of a rhenium complex, such as ReBr(CO)₅, produced the corresponding ketones and aldehydes in moderate to good yields. It was suggested that the preparation of an ether, an intermolecular dehydrated product, was the first step of the reaction.     

Use of multi-coil parallel-gap resonators for co-registration EPR/NMR imaging

This article reports experimental investigations on the use of RF resonators for continuous-wave electron paramagnetic resonance (cw-EPR) and proton nuclear magnetic resonance (NMR) imaging. We developed a composite resonator system with multi-coil parallel-gap resonators for co-registration EPR/NMR imaging. The resonance frequencies of each resonator were 21.8MHz for NMR and 670MHz for EPR. A smaller resonator (22mm in diameter) for use in EPR was placed coaxially in a larger resonator (40mm in diameter) for use in NMR. RF magnetic fields in the composite resonator system were visualized by measuring a homogeneous 4-hydroxy-2,2,6,6-tetramethyl-piperidinooxy (4-hydroxy-TEMPO) solution in a test tube. A phantom of five tubes containing distilled water and 4-hydroxy-TEMPO solution was also measured to demonstrate the potential usefulness of this composite resonator system in biomedical science. An image of unpaired electrons was obtained for 4-hydroxy-TEMPO in three tubes, and was successfully mapped on the proton image for five tubes. Technical problems in the implementation of a composite resonator system are discussed with regard to co-registration EPR/NMR imaging for animal experiments.