On-surface isostructural transformation from a hydrogen-bonded network to a coordination network for tuning the pore size and guest recognition

Rational manipulation of supramolecular structures on surfaces is of great importance and challenging. We show that imidazole-based hydrogen-bonded networks on a metal surface can transform into an isostructural coordination network for facile tuning of the pore size and guest recognition behaviours. Deposition of triangular-shaped benzotrisimidazole (H₃btim) molecules on Au(111)/Ag(111) surfaces gives honeycomb networks linked by double N–H⋯N hydrogen bonds. While the H₃btim hydrogen-bonded networks on Au(111) evaporate above 453 K, those on Ag(111) transform into isostructural [Ag₃(btim)] coordination networks based on double N–Ag–N bonds at 423 K, by virtue of the unconventional metal–acid replacement reaction (Ag reduces H⁺). The transformation expands the pore diameter of the honeycomb networks from 3.8 Å to 6.9 Å, giving remarkably different host–guest recognition behaviours for fullerene and ferrocene molecules based on the size compatibility mechanism.

A hydrogen-bonded network on a Ag(111) surface can transform into an isostructural Ag(i) coordination network, giving drastically different host–guest recognition behaviours.     

Optimization of on-chip elongation for fabricating double-stranded DNA microarrays

The sequence-specific recognitions between DNA and proteins are playing important roles in many biological functions. The double-stranded DNA microarrays (dsDNA microarrays) can be used to study the sequence-specific recognitions between DNAs and proteins in highly parallel way. In this paper, two different elongation processes in forming dsDNA from the immobilized oligonucleotides have been compared in order to optimize the fabrication of dsDNA microarrays: (1) elongation from the hairpins formed by the self-hybridized oligonucleatides spotted on a glass; (2) elongation from the complementary primers hybridized on the spotted oligonucleatides. The results suggested that the dsDNA probes density produced by the hybridized-primer extension was about four times lower than those by the self-hybridized hairpins. Meanwhile, in order to reduce the cost of dsDNA microarrays, we have replaced the Klenow DNA polymerase with Taq DNA polymerase, and optimized the reaction conditions of on-chip elongation. Our experiements showed that the elongation temperature of 50 °C and the Mg²⁺ concentration of 2.5 mM are the optimized conditions in elongation with Taq DNA polymerase. A dsDNA microarray has been successfully constructed with the above method to detect NF-kB protein.     

Backbone cleavages of [M - H](-) anions of peptides. Cyclisation of citropin 1 peptides involving reactions between the C-terminal [CONH](-) residue and backbone amide carbonyl groups. A new type of beta cleavage: a joint experimental and theoretical study

This paper reports the study of backbone cleavages in the collision-induced negative-ion mass spectra of the [M - H](-) anions of some synthetic modifications of the bioactive amphibian peptide citropin 1 (GLFDVIKKVASVIGGL-NH(2)). The peptides chosen for study contain no amino acid residues which could effect facile side-chain cleavage, i.e. Ser (-CH(2)O, side-chain cleavage) and Asp (-H(2)O) are replaced by Ala or Lys. We expected that such peptides should exhibit standard and pronounced peaks due to alpha cleavage ions (and to a lesser extent beta cleavage ions) in their collision-induced negative-ion spectra. This expectation was realised, but the spectra also contained peaks formed by a new series of cleavage anions. These are produced following cyclisation of the C-terminal CONH(-) moiety at carbonyl functions of amide groups along the peptide backbone; effectively transferring the NH of the C-terminal CONH(-) group to other amino acid residues. We have called the product anions of these processes beta' ions, in order to distinguish them from standard beta ions. Some beta' ions also fragment directly to some other beta' ions of smaller mass. The reaction coordinates of alpha,beta and beta' backbone processes have been calculated at the HF/6-31G*//AM1 level theory for simple model systems. The initial cyclisation step of the beta' sequence is barrierless and exothermic. Subsequent steps have a maximum barrier of +40 kcal mol(-1), with the overall reaction being endothermic by some 30 kcal mol(-1) at the level of theory used. These calculations take no account of the complexity of the conformationally flexible peptide system, and it is surprising that each of the two reacting centres can 'find' each other in such a large system.     

Reactions of hexafluorobenzene with some organometallic reagents

The inverse addition of trichloro-2-thienyl-lithium to hexafluorobenzene in THF or ether has given 1,4-bis(trichloro-2-thienyl) tetrafluorobenzene in addition to the tetrakis(trichloro-2-thienyl)difluorobenzene. n-Butyl-lithium with hexafluorobenzene gave mono, bis tris and tetrakis compounds whereas t-BuLi afforded only 1,4-bis(t-butyl)tetrafluorobenzene in excellent yield. Other organolithium and organomagnesium reagents gave the expected products. IR, ¹⁹F NMR and UV spectral data are presented for the several new compounds.     

Dimeric tetrahedral complexes of manganese(II) and iron(II) with benzoyl hydrazones

Summary Dimeric manganese(II)and iron(II)complexes, (ML)₂, derived from benzoyl hydrazones ofo-hydroxyaryl aldehydes and ketones arc described and characterised by elemental analyses and by conductance, molecular weight, magnetic, electronic and i.r. spectral measurements. The dimeric nature of the complexes is revealed by i.r. spectra which show bands atca. 885 Mn²⁺ and 820 cm^–1 Fe²⁺, characteristic of ring vibrations. The i.r. spectra reveal the terdentate nature of the ligands. The electronic spectra in dimethylformamide are consistent with the tetrahedral nature of the complexes. The appreciable lowering in _eff is attributed to the presence of exchange interactions between two paramagnetic atomsvia oxygen bridges.Reprints of this article are not available.     

Tuning the Hybridization of Local Exciton and Charge-Transfer States in Highly Efficient Organic Photovoltaic Cells

Decreasing the energy loss is one of the most feasible ways to improve the efficiencies of organic photovoltaic (OPV) cells. Recent studies have suggested that non-radiative energy loss ( ) is the dominant factor that hinders further improvements in state-of-the-art OPV cells. However, there is no rational molecular design strategy for OPV materials with suppressed . Herein, taking molecular surface electrostatic potential (ESP) as a quantitative parameter, we establish a general relationship between chemical structure and intermolecular interactions. The results reveal that increasing the ESP difference between donor and acceptor will enhance the intermolecular interaction. In the OPV cells, the enhanced intermolecular interaction will increase the charge-transfer (CT) state ratio in its hybridization with the local exciton state to facilitate charge generation, but simultaneously result in a larger . These results suggest that finely tuning the ESP of OPV materials is a feasible method to further improve the efficiencies of OPV cells.     

Micro-Raman investigations of myelins in aerosol-OT/water system

Surfactant outgrowth during dissolution as myelin figures, which happens on contact with water, is of prime importance in emulsification and detergency. Micro-Raman investigation of different lyotropic phases formed during dissolution of aerosol-OT (bis 2-ethylhexyl sulfosuccinate) in water during myelin formation reveals the flexible arrangement of the surfactant bilayers in myelin. The conformation around CC-CS bond and the hydrocarbon chains of aerosol-OT in the different liquid crystalline phases were identified from the fingerprints of CC-CS stretching, C-C stretching, C-H bending, and stretching frequencies. Existence of mixture of trans and gauche conformations around CC-CS bond and that of the hydrocarbon chains in myelin supports the fluid nature of bilayers by which it is made. Similar conformations of hydrocarbon chains in lamellar phase and in myelin support the concept of myelins being rolled up lamella. The observations are in line with the disorderness of the hydrocarbon chains in the bilayers of phospholipids that has been reported earlier. From the C-C stretching frequencies at the root of myelins, the kinked structure of the hydrocarbon chain is identified, and loose packing of molecules which would facilitate water transport across membranes is evident.     

Caterpillars with maximum degree 3 are antimagic

Let $G=(V,E)$ be a connected graph with $m$ edges. An antimagic labeling of $G$ is a one-to-one mapping from $E$ to $\{1,2,\dots ,m\}$ such that the vertex sum (i.e., sum of the labels assigned to edges incident to a vertex) for distinct vertices are different. A graph $G$ is called antimagic if $G$ has an antimagic labeling. It was conjectured by Hartsfield and Ringel that every tree other than $K_2$ is antimagic. The conjecture remains open though it was verified for trees with some constrains. Caterpillars are an important subclass of trees. This paper shows caterpillars with maximum degree 3 are antimagic, which gives an affirmative answer to an open problem of Lozano et al. (2019).     

Catalytic activity of chiral chelating N-heterocyclic carbene palladium complexes towards asymmetric allylic alkylation

Abstract

The catalytic activity of a series of chiral heteroaryl coordinated chelating N-heterocyclic carbene (NHC) palladium complexes towards asymmetric allylic alkylation (AAA) were presented here. The effects of different N-substituents, NHC backbones and chelate rings on the catalytic activity and the enantioselectivity of the alkylation of (E)-1,3-diarylallyl acetates with dialkyl malonate were investigated. The results showed that, under the optimized conditions, complexes 3a, 3b, and 3i carrying the pyridinyl-coordinated five-membered chelate ring showed high catalytic activity and chiral induction efficiency. The corresponding alkylated products were obtained in high yields with moderate ee. Furthermore, it was found that the substituents of (E)-1,3-diarylallyl acetates and the type of the nucleophile affect the results as well.