Molecular structure calculations without clamping the nuclei

A number of recent papers have considered ways in which molecular structure may be calculated when both the electrons and the nuclei are treated from the outset as quantum particles. This is in contrast to the conventional approach in which the nuclei initially have their positions fixed and so merely provide a potential for electronic motion. The usual approach is generally assumed to be justified by the 1927 work of Born and Oppenheimer. In this paper we discuss what precisely might be anticipated in the way of molecular structure from a mathematical consideration of the spectral properties of the full Coulomb Hamiltonian, to what extent the very idea of molecular structure might be dependent upon treating the nuclei simply as providing a potential and the extent to which the work of Born and Oppenheimer can be used to support this position.     

Ionization constants for deuterium oxide in deuterium oxide-organic mixtures

A potentiometric method using a glass electrode has been applied to determination of ionization constants for deuterium oxide (D₂O) in binary mixtures of D₂O with dioxane, tetrahydrofuran, acetone, dimethylsulfoxide, CH₃CH₂OD, and CH₃OD at 25°C. The results are compared with values of ionization constants for H₂O obtained previously in the corresponding H₂O-organic mixtures, and the isotope effect is shown to be small. Further calculations with the D₂O results show that the first five solvents mentioned above are neither appreciably acidic nor basic in D₂O solution, but that CH₃OD shows slightly acidic behavior (pK_a=16.0±0.3).     

DNA-templated three-branched nanostructures for nanoelectronic devices

Three-branched DNA molecules have been designed and assembled from oligonucleotide components. These nucleic acid constructs contain double- and single-stranded regions that control the hybridization behavior of the assembly. Specific localization of a single streptavidin molecule at the center of the DNA complex has been investigated as a model system for the directed placement of nanostructures. Highly selective silver and copper metallization of the DNA template has also been characterized. Specific hybridization of these DNA complexes to oligonucleotide-coupled nanostructures followed by metallization should provide a bottom-up self-assembly route for the fabrication and characterization of discrete three-terminal nanodevices.     

Field gradient electrophoresis

The class of equilibrium gradient methods utilizes the opposition of two forces, at least one of which changes in magnitude with position, to separate and concentrate analytes. The drawback of many methods of this type is that the production of two opposing forces requires in comparison to standard methods, such as capillary electrophoresis, a relatively complex apparatus. In addition, for techniques such as electric field gradient focusing, hydrodynamic flow leads to Taylor dispersion, which limits the attainable concentration factor. We propose a new method, gradient field electrophoresis, which achieves analyte separation and focusing with only one spatially varying force, an electric field gradient. A model for the method is developed and used to analyze peak capacity. Experimental results for a protein (R-phycoerythrin) are given and compared to the model.     

Photocontrol of DNA binding specificity of a miniature engrailed homeodomain

Control of DNA binding of HDH-3, a 18-residue polypeptide based on the recognition helix of the Q50K engrailed homeodomain, has been achieved. HDH-3 was linked to an azobenzene cross-linker through two cysteine residues in an i, i + 11 spacing. For the thermodynamically stable trans configuration of the cross-linker, the dark-adapted peptide (dad-HDH-3) adopted a mainly alpha-helical structure as judged by circular dichroism (CD) spectroscopy. After irradiation with light of 360 nm, the helical content of the peptide (irrad-HDH-3) was reduced significantly and the CD spectrum of the irradiated peptide resembled that of the largely unstructured, unalkylated peptide. Despite lacking helices-1 and -2 and the N-terminal arm of Q50K engrailed, dad-HDH-3 bound to its natural DNA target sequence TAATCC (QRE) with high affinity (K(D) = 7.5 +/- 1.3 nM). The binding affinity for the mutant DNA sequence, TAATTA (ERE), was reduced significantly (K(D) = 140 +/- 11 nM). Unlike irrad-HDH-3, which like the unalkylated parent peptide displayed only marginal DNA binding specificity, dad-HDH-3 specified base pairs 5 and 6 of QRE with an accuracy rivaling that of the intact wild-type Q50K engrailed homeodomain, making dad-HDH-3 the most specific designed DNA binding miniature homeodomain reported to date. Moreover, DNA binding affinity and specificity of HDH-3 could be controlled externally by irradiation with light.     

Encapsulation of Mithramycin in Liposomes in Response to a Transmembrane Gradient of Calcium Ions

The recent discovery that mithramycin(MTR) in aqueous solution forms a high affinity[Ca(MTR)4]2- complex led us to the idea thatCa2+-loaded liposomes might be able to accumulateMTR in their aqueous internal compartment. Wetherefore investigated the uptake of MTR into largeunilamellar vesicles (LUV) containing NaCl orCaCl2. Our data show that MTR was efficientlyaccumulated within LUV made fromdipalmitoylphosphatidylcholine and cholesterol, onlywhen the liposomes contained Ca2+ and wereresuspended in a Ca2+-free medium. A drugencapsulation efficiency as high as 60% was achieved,at a drug to lipid molar ratio of 1/18. The circulardichroism and fluorescence excitation spectra ofliposome-encapsulated MTR (LMTR) displayed strongsimilarities with those of the [Ca(MTR)4]2-complex. LMTR was found to be stable, when submittedto conditions that destabilized the[Ca(MTR)4]2- complex. Upon dilution andincubation for 24 h at 37 °C, MTR-containingliposomes did not release a significant amount of MTR.These properties were attributed to the formation ofa high affinity complex between MTR and Ca2+inthe aqueous compartment of liposomes.     

Electrically actuated, pressure-driven microfluidic pumps

In order to make the lab-on-a-chip concept a reality, it is desirable to have an integrated component capable of pumping fluids through microchannels. We have developed novel, electrically actuated micropumps and have integrated them with microfluidic systems. These devices utilize the build-up of electrolysis gases to achieve pressure-driven pumping, only require small voltages (approximately 10 V), and have approximate dimensions of 5 cm x 3 cm x 2 cm. Furthermore, these micropumps are composed of relatively inexpensive materials, and the reversible sealability of their poly(dimethylsiloxane) body to different microfluidic arrays enables repeated uses of the same pump. Under an applied potential of 10 V, three different micropumps had average flow rates of 8-13 microL min(-1) for water being pumped through five different 2 cm-long, 5500 microm(2) cross-sectional-area channels in poly(methyl methacrylate), in approximate agreement with predicted pump rates. We have also evaluated pump operation at the lower applied potential of 8 V and observed an average flow rate of 6.1 microL min(-1) for a pump-channel system. The current micropump design is capable of sustaining pumping pressures in the range of 300 kPa. The various advantages of these micropumps make them well suited for use in lab-on-a-chip analysis techniques.     

Quaternary adamantine selenides and tellurides of the form I III IV VI4

The preparation of a range of polycrystalline Selenides and Tellurides of the form I III IV VI₄ was undertaken. Twelve Selenides with quaternary composition were prepared but the eight Tellurides attempted did not grow as quaternaries. Single crystal samples of CuGaSnSe₄ were grown by vapour transport. X-Ray powder photography confirmed that the quaternary Selenides have tetragonal Chalcopyrite structure with a c/a ratio of approximately 2. A systematic variation of unit cell volume and of c/a was found over the entire range of compounds grown.     

Measurement of unstable burning velocities of iso-octane–air mixtures at high pressure and the derivation of laminar burning velocities

A new technique is reported for measuring burning velocities at high pressures in the final stages of two inwardly propagating flame kernels in an explosion bomb. The flames were initiated at diametrically opposite spark electrodes, close to the wall, in quiescent mixtures. Measurements of pressure and flame kernel propagation speeds by high-speed photography showed the burning velocities to be elevated above the corresponding laminar burning velocities as a result of the developing flame instabilities. The enhancement increased with increase in pressure and decreased with increase in Markstein number. When the Markstein number was negative, instabilities could be appreciable, as could the enhancement. For the iso-octane–air mixtures investigated, where the mixtures had well-characterised Markstein numbers or critical Peclet numbers at the relevant pressures and temperatures, it was possible to explain the enhancement quantitatively by the spherical explosion flame instability theory of Bechtold and Matalon, provided the critical Peclet number was that observed experimentally, and allowance was made for the changing pressure. With this theoretical procedure, it was possible to derive values of laminar burning velocity from the measured values of burning velocity over a wide range of equivalence ratios, pressures, and temperatures. The values became less reliable at the higher temperatures and pressures as the data on Markstein and critical Peclet numbers became less certain. It was found that with iso-octane as the fuel the laminar burning velocity decreased during isentropic compression.