Tandem mass spectrometry in the clinical analysis of variant hemoglobins

A combination of mass spectrometric techniques (electrospray mass spectrometry, liquid secondary-ion mass spectrometry (LSIMS), tandem mass spectrometry) has been used for variant hemoglobin detection and characterization. Electrospray mass spectrometry allowed analysis of mixtures of intact globins giving the molecular weights (accuracy 1-2 Da), and information about relative amounts of globins present, simultaneously. Abnormal hemoglobins detected in this way and by other means (screening, clinical symptoms) were fractionated by C-4 reverse phase high-performance liquid chromatography (HPLC), and the separated globin chains (or the mixture of whole precipitated globin) were digested with trypsin. The tryptic peptides were separated by C-18 reverse phase HPLC and analysed by LSIMS to narrow down the mutation site to a single peptide. In some instances, the molecular weight of a variant peptide was sufficient to determine the mutation uniquely. When molecular weight information alone was insufficient to identify the mutation and its site, the peptide was sequenced by tandem mass spectrometry on a 4-sector instrument. In cases where more than one possible mutation site was present in the peptide and the mutation resulted in a change of only 1 Da in the peptide mass, the resolution and mass measurement accuracy of the 4-sector machine were essential in determining the correct sequence. The practical application of the methodologies presented is illustrated by the identification and analysis of Hb G-San Jose, Hb Willamette and D-Iran.     

Structure of the O-Specific Polysaccharide of Hafnia Alvei 23 Having an Oligosaccharide-Phosphate Repeating Unit

ABSTRACT

Lipopolysaccharide (LPS) of Hafnia alvei 23 has an acid-labile O-specific polysaccharide (OPS) with a pentasaccharide-phosphate repeating unit containing D-Glc1P, D-GlcNAc, L-Fuc, 6-deoxy-D-talose (D-6dTal), 4-acetamido-4,6-dideoxy-D-glucose (D-Qui4NAc), and an O-acetyl group. A partially degraded OPS was obtained by hydrolysis of LPS with 0.25 M sodium acetate in aqueous 0.5% acetic acid. Fractionation of LPS on Sephadex G-200 in DOC buffer allowed isolation of long-chain LPS species which, together with OPS, were studied by methylation analysis, chemical degradations (O-deacetylation, dephosphorylation with 48% hydrofluoric acid, Smith degradation), and ¹H and ¹³C NMR spectroscopy, including 2D COSY, TOCSY, NOESY, and H-detected ¹H,¹³C heteronuclear single-quantum coherence (HSQC) experiments. The following structure of the repeating unit of OPS was established:     

The -Cys-Cys- motif in Helicobacter pylori's Hpn and HspA proteins is an essential anchoring site for metal ions

The Hpn and HspA proteins from H. pylori are significant for nickel homeostasis and protect the cells from higher concentrations of external metal ions. Both proteins have a unique histidine- and cysteine-rich domain at the C terminus. The interactions of Ni(2+), Bi(3+), Zn(2+) and Cd(2+) ions with C-terminal Ac-CCSTSDSHHQ-NH(2) and Ac-EEGCCHGHHE-NH(2) fragments from Hpn and the Ac-GSCCHTGNHD-NH(2) sequence from HspA were studied by potentiometry, mass spectrometry, circular dichroism and UV-Vis spectroscopy. Ac-CC-NH(2) was used as a reference peptide. The studies have shown that nickel ions form planar complexes with a {2S(-),N(-)} binding mode. The thiol sulfurs of the -Cys-Cys- motif are also the anchoring sites for Bi(3+), Zn(2+) and Cd(2+) ions. The studied protein fragments have the highest affinity for Bi(3+) ions. The thermodynamic stability of Ni(2+) is much higher then that of Zn(2+).     

The Applicability of Essential Oils in Different Stages of Production of Animal-Based Foods

Essential oils (EOs) have been used for centuries, and interest in these compounds has been revived in recent years. Due to their unique chemical composition as well as antimicrobial, immunostimulatory, anti-inflammatory and antioxidant properties, EOs are used in pharmacology, cosmetology and, increasingly, in animal breeding and rearing, and processing of animal raw materials. Essential oils have become a natural alternative to preservatives, taste enhancers and, most importantly, antibiotics, because the European Union banned the use of antibiotics in metaphylaxis in animal husbandry in 2006. In the animal production chain, EOs are used mainly as feed additives to improve feed palatability and increase feed intake, improve animal resistance and health status, and to prevent and treat diseases. Recent research indicates that EOs can also be applied to sanitize poultry houses, and they can be used as biopesticides in organic farming. Essential oils effectively preserve meat and milk and, consequently, improve the safety, hygiene and quality of animal-based foods. Novel technologies such as encapsulation may increase the bioavailability of EOs and their application in the production of food and feed additives.     

Synthesis and structural analysis of polyester prodrugs of norfloxacin

Two-, three- and four-arm, star-shaped poly(epsilon-caprolactone) and poly(D,L-lactide) homopolymers, and copolymers of epsilon-caprolactone with D,L-lactide were synthesized via ring-opening polymerization of cyclic esters in the presence of glycerol, penthaerythritol and poly(ethylene glycol) as initiators and stannous octoate as a catalyst. Thus obtained oligomers were successfully used in the synthesis of novel macromolecular prodrugs of norfloxacin. The structures of the polymers and prodrugs were elucidated by means of MALDI-TOF MS, NMR and IR studies.     

Spin squeezing in finite temperature Bose-Einstein condensates: Scaling with the system size

We perform a multimode treatment of spin squeezing induced by interactions in atomic condensates, and we show that, at finite temperature, the maximum spin squeezing has a finite limit when the atom number N →∞ at fixed density and interaction strength. To calculate the limit of the squeezing parameter for a spatially homogeneous system we perform a double expansion with two small parameters: 1/N in the thermodynamic limit and the non-condensed fraction ⟨N _nc⟩/N in the Bogoliubov limit. To test our analytical results beyond the Bogoliubov approximation, and to perform numerical experiments, we use improved classical field simulations with a carefully chosen cut-off, such that the classical field model gives for the ideal Bose gas the correct non-condensed fraction in the Bose-condensed regime.     

Structure of partially reduced xPbO (1 − x)SiO2 glasses: combined EXAFS and MD study

We have studied the structure of partially reduced lead-silicate glasses using combined EXAFS (extended X-ray absorption fine structure) and MD (molecular dynamics) methods. The analysis was performed for glasses of x[(1 − p)Pb pPbO] (1 − x)SiO₂ composition, x = 0.3, 0.5, 0.7, where parameter (1 − p) describes the degree of reduction, i.e. the content of the granular metallic phase, appearing as the result of the reduction process (e.g. annealing in hydrogen atmosphere). In the EXAFS experiment (1 − p) was expressed via the time of reduction realized at 400 °C (1.5 h, 24 h, 70 h), whereas in the MD simulations it was determined precisely by using proper numbers of particles (corresponding to (1 − p) = 0.0, 0.25, 0.5, 0.75 and 1.0). In the paper we describe in detail the local structure around lead atoms and its changes in the function of glass composition and reduction degree. The tendency for agglomeration of Pb⁰ into clusters, the formation of the granular metallic phase, and continuity of silica and lead oxide subnetworks are discussed. A good agreement between EXAFS-extractcd and MD-extracted parameters of the short-range structure encouraged us to preform a medium-range order analysis, based on the MD simulations only. Moreover, combining the EXAFS and MD methods we could correlate the reduction time (technological parameter) with the degree of reduction (1 − p) and the actual state of the granular structure. The latter relation may be useful for controlled production of reduced glasses of pre-requcstcd physical properties.