Tween 20-stabilized gold nanoparticles combined with adenosine triphosphate-BODIPY conjugates for the fluorescence detection of adenosine with more than 1000-fold selectivity

This study describes the development of a simple, enzyme-free, label-free, sensitive, and selective system for detecting adenosine based on the use of Tween 20-stabilized gold nanoparticles (Tween 20-AuNPs) as an efficient fluorescence quencher for boron dipyrromethene-conjugated adenosine 5′-triphosphate (BODIPY-ATP) and as a recognition element for adenosine. BODIPY-ATP can interact with Tween 20-AuNPs through the coordination between the adenine group of BODIPY-ATP and Au atoms on the NP surface, thereby causing the fluorescence quenching of BODIPY-ATP through the nanometal surface energy transfer (NSET) effect. When adenosine attaches to the NP surface, the attached adenosine exhibits additional electrostatic attraction to BODIPY-ATP. As a result, the presence of adenosine enhances the efficiency of AuNPs in fluorescence quenching of BODIPY-ATP. The AuNP-induced fluorescence quenching of BODIPY-ATP progressively increased with an increase in the concentration of adenosine; the detection limit at a signal-to-noise ratio of 3 for adenosine was determined to be 60 nM. The selectivity of the proposed system was more than 1000-fold for adenosine over any adenosine analogs and other nucleotides. The proposed system combined with a phenylboronic acid-containing column was successfully applied to the determination of adenosine in urine.     

Proteomics of snake venoms from Elapidae and Viperidae families by multidimensional chromatographic methods

Snake venoms contain a large number of biologically active substances and the venom components are very useful for pharmaceutical applications. Our goal is to separate and identify components of snake venoms in ten snake species from the Elapidae and Viperidae families using multidimensional chromatographic methods. The multidimensional chromatographic methods include reversed-phase high-performance liquid chromatography (RP-HPLC), sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), lab-on-a-chip, two-dimensional electrophoresis (2-DE), and mass spectrometry. The venoms of eight snake species demonstrated major differences in hydrophobicity, molecular weight separations, and 2-DE protein distribution patterns. The 2-DE images showed major differences between families, within each family and even between the same species. Venoms of the Elapidae family showed many basic proteins with a wide range of molecular weights, while venoms of the Viperidae family showed wide ranges of pI and molecular weights, especially for Trimeresurus sp. The multidimensional chromatographic methods revealed specific differences in venom proteins intra-species as well as between species and families. We have isolated and identified proteins that may be unique for each species for further studies in the proteome of snake venoms and their potentially use in the pharmaceutical applications.     

Selective extraction of melamine using 11-mercaptoundecanoic acid-capped gold nanoparticles followed by capillary electrophoresis

This study describes the use of 11-mercaptoundecanoic acid-capped gold nanoparticles (MUA-AuNPs) for selective extraction of melamine prior to analysis by capillary electrophoresis with UV detection. The highest degree of melamine-induced aggregation of MUA-AuNPs was found to occur at pH 5.0, indicating that the NP aggregation is mainly because of hydrogen bonding between the carboxylate groups of MUA and the amine groups of melamine. Moreover, the degree of melamine-induced NP aggregation gradually increased when the chain length of the mercaptoalkanoic acid was increased from two to 12 carbon atoms. At pH 5.0, the extraction efficiency of melamine was highly dependent on the concentration of MUA-AuNPs, the concentration of dithiothreitol (DTT), the extraction time between MUA-AuNPs and melamine, and the incubation time between melamine-adsorbed AuNPs and DTT. The separation of the extracted melamine and DTT (releasing agent) was accomplished using a solution of 10 mM phosphate (pH 6.0) containing 1.6% (v/v) poly(diallyldimethylammonium chloride). Under the optimum extraction and separation conditions, the limit of detection at a signal-to-noise ratio of 3 was estimated to be 77 pM for melamine, with linear range of 1-1000 nM. The proposed method was successfully applied to the determination of melamine in tap water and in milk.     

Colorimetric assay for cyanide and cyanogenic glycoside using polysorbate 40-stabilized gold nanoparticles

This study describes a simple method for the selective and sensitive detection of cyanide and endogenous biological cyanide using polysorbate 40-stabilized gold nanoparticles.     

Role of 5-thio-(2-nitrobenzoic acid)-capped gold nanoparticles in the sensing of chromium(vi): remover and sensor

This study describes a simple, rapid method for sensing Cr(vi) using 5-thio-(2-nitrobenzoic acid) modified gold nanoparticles (TNBA-AuNPs) as a remover for Cr(iii) and as a sensor for Cr(vi). We discovered that TNBA-AuNPs were dispersed in the presence of Cr(vi), whereas Cr(iii) induced the aggregation of TNBA-AuNPs. Due to this phenomenon, TNBA-AuNPs can be used as a sorbent material for the removal of >90% Cr(iii), without removing Cr(vi). After centrifuging a solution containing Cr(iii), Cr(vi), and TNBA-AuNPs, Cr(iii) and Cr(vi) were separately present in the precipitate and supernatant. In other words, TNBA-AuNPs are capable of separating a mixture of Cr(iii) and Cr(vi). The addition of ascorbic acid to the supernatant resulted in a reduction of Cr(vi) to Cr(iii), driving the aggregation of TNBA-AuNPs. The selectivity of this approach is more than 1000-fold for Cr(vi) over other metal ions. The minimum detectable concentration of Cr(vi) was 1 μM using this approach. Inductively coupled plasma mass spectrometry provided an alternative for the quantification of Cr(iii) and Cr(vi) after a mixture of Cr(iii) and Cr(vi) had been separated by TNBA-AuNPs. The applicability of this approach was validated through the analysis of Cr(vi) in environmental water samples.     

A relational perspective of attribute reduction in rough set-based data analysis

Attribute reduction is very important in rough set-based data analysis (RSDA) because it can be used to simplify the induced decision rules without reducing the classification accuracy. The notion of reduct plays a key role in rough set-based attribute reduction. In rough set theory, a reduct is generally defined as a minimal subset of attributes that can classify the same domain of objects as unambiguously as the original set of attributes. Nevertheless, from a relational perspective, RSDA relies on a kind of dependency principle. That is, the relationship between the class labels of a pair of objects depends on component-wise comparison of their condition attributes. The larger the number of condition attributes compared, the greater the probability that the dependency will hold. Thus, elimination of condition attributes may cause more object pairs to violate the dependency principle. Based on this observation, a reduct can be defined alternatively as a minimal subset of attributes that does not increase the number of objects violating the dependency principle. While the alternative definition coincides with the original one in ordinary RSDA, it is more easily generalized to cases of fuzzy RSDA and relational data analysis.     

Sodium hydroxide as pretreatment and fluorosurfactant-capped gold nanoparticles as sensor for the highly selective detection of cysteine

A sensor for detecting cysteine (Cys) in a solution of fluorosurfactant (FSN)-capped gold nanoparticles (AuNPs) has been developed. Under acidic conditions, FSN-capped AuNPs are aggregated in the presence of homocysteine (HCys) and Cys but not in the presence of cysteinylglycine, glutathione, and gamma-glutamycysteine. When adding NaOH to a solution of HCys, the five-membered ring transition state is formed through intramolecular hydrogen abstraction. By contrast, it is difficult for Cys to form a four-membered ring transition state after Cys has been pretreated with NaOH. As a result, the HCys-induced aggregation of the FSN-capped AuNPs is suppressed because the five-membered ring transition state exhibits relatively larger steric hindrance and has stronger interaction with the FSN molecules. Thus, we can discriminate between Cys and HCys on the basis of different aggregation kinetics. Under the optimum condition, the selectivity of the probe for Cys in aqueous solutions is remarkably high over the other aminthiols. Note that HCys and Cys have very similar structure and pK(a) value. We have validated the applicability of our method through the analyses of Cys in urine samples. It is believed that this approach has great potential for the detection of Cys in biological samples.     

On-line concentration of proteins by SDS-CGE with LIF detection

We present a simple approach for on-line concentration of SDS-protein complexes by using poly(vinyl alcohol) (PVA) solution in CGE. In comparison to the coated capillary, the presence of EOF in CGE omitted the need to fill the capillaries with polymer solutions prior to the analysis. More importantly, we found that highly reproducible separation of eight proteins by 3.5% PVA was achieved between runs and without the regeneration of high bulk EOF; the RSD of migration times was less than 0.7%. To further improve the concentration sensitivity, neutral PVA was introduced into the capillary with the help of EOF to act as sieving matrix. The occurrence of stacking at the boundary between the PVA and the sample zone is mainly due to the retardation of proteins by PVA. As a result, the LODs at an S/N of 3 for SDS-protein complexes are of the order of sub-nM to several nM. For example, the LOD for BSA is 0.78 nM, which is a 91-fold sensitivity enhancement over the normal injection. In addition, our stacking method has been applied to the analyses of proteins in Escherichia coli cells. The peak for beta-galactosidase (E. coli) was observed after 0.1 microM beta-galactosidase was spiked into the E. coli samples.