Modeling deoxyribose radicals by neutralization-reionization mass spectrometry. Part 1. Preparation,dissociations, and energetics of 2-hydroxyoxolan-2-yl radical,neutral isomers,and cations

Collisional neutralization of several isomeric C(4)H(7)O(2) cations is used to generate radicals that share some structural features with transient species that are thought to be produced by radiolysis of 2-deoxyribose. The title 2-hydroxyoxolan-2-yl radical (1) undergoes nearly complete dissociation when produced by femtosecond electron transfer from thermal organic electron donors dimethyl disulfide and N,N-dimethylaniline in the gas phase. Product analysis, isotope labeling ((2)H and (18)O), and potential energy surface mapping by ab initio calculations at the G2(MP2) and B3-PMP2 levels of theory and in combination with Rice-Ramsperger-Kassel-Marcus (RRKM) kinetic calculations are used to assign the major and some minor pathways for 1 dissociations. The major (approximately 90%) pathway is initiated by cleavage of the ring C-5[bond]O bond in 1 and proceeds to form ethylene and *CH(2)COOH as main products, whereas loss of a hydrogen atom forms 4-hexenoic acid as a minor product. Loss of the OH hydrogen atom forming butyrolactone (2, approximately 9%) and cleavage of the C-3[bond]C-4 bonds (<1%) in 1 are other minor pathways. The major source of excitation in 1 is by Franck-Condon effects that cause substantial differences between the adiabatic and vertical ionization of 1 (5.40 and 6.89 eV, respectively) and vertical recombination in the precursor ion 1(+) (4.46 eV). (+)NR(+) mass spectra distinguish radical 1 from isomeric radicals 2-oxo-(1H)oxolanium (3), 1,3-dioxan-2-yl (9), and 1,3-dioxan-4-yl (10) that were generated separately from their corresponding ion precursors.     

Modeling deoxyribose radicals by neutralization-reionization mass spectrometry. Part 2. Preparation,dissociations, and energetics of 3-hydroxyoxolan-3-yl radical and cation

The title radical (1) is generated in the gas-phase by collisional neutralization of carbonyl-protonated oxolan-3-one. A 1.5% fraction of 1 does not dissociate and is detected following reionization as survivor ions. The major dissociation of 1 (approximately 56%) occurs as loss of the hydroxyl H atom forming oxolan-3-one (2). The competing ring cleavages by O[bond]C-2 and C-4[bond]C-5 bond dissociations combined account for approximately 42% of dissociation and result in the formation of formaldehyde and 2-hydroxyallyl radical. Additional ring-cleavage dissociations of 1 resulting in the formation of C(2)H(3)O and C(2)H(4)O cannot be explained as occurring competitively on the doublet ground (X) electronic state of 1, but are energetically accessible from the A and higher electronic states accessed by vertical electron transfer. Exothermic protonation of 2 also produces 3-oxo-(1H)-oxolanium cation (3(+)) which upon collisional neutralization gives hypervalent 3-oxo-(1H)-oxolanium radical (3). The latter dissociates spontaneously by ring opening and expulsion of hydroxy radical. Experiment and calculations suggest that carbohydrate radicals incorporating the 3-hydroxyoxolan-3-yl motif will prefer ring-cleavage dissociations at low internal energies or upon photoexcitation by absorbing light at approximately 590 and approximately 400 nm.     

Tetrameric zirconium(IV) compounds derived from oxozirconium(IV) chloride and heterocyclic aldimines and ketimines

Summary Interaction of ZrOCl₂:8H₂O, [Zr₄(OH)₈(H₂O)₁₆]Cl₈ 12H₂O, with the heterocyclic, aldimines (PyAlA) and heterocyclic ketimines (AcPyA) in Me₂CO in the presence of HC(OEt)₃ yields white amorphous compounds of the type [Zr₄(OH)₁₂(H₂O)₈(PyAlA)₂]Cl₄ and [Zr₄(OH)₁₂(H₂O)₁₀(AcPyA)]Cl₄. Presumably these compounds have a tetrameric dodecahedral structure, derived from the parent. The analytical data, i.r., electrical conductance and t.g. measurements all favour the tetrameric formulation. The t.g. studies also indicate the intermediacy of complex species, which lose water and the Schiff base ligands, with increase in temperature.     

Characterization by tandem mass spectrometry of stable cysteine sulfenic acid in a cysteine switch peptide of matrix metalloproteinases

Cysteine sulfenic acid (Cys-SOH) is an elusive intermediate in reactive oxygen species-induced oxidation reactions of many proteins such as peroxiredoxins and tyrosine phosphatases. Cys-SOH is proposed to play a vital role in catalytic and signaling functions. The formation of cysteine sulfinic acid (Cys-SO(2)H) and cysteine sulfonic acid (Cys-SO(3)H) has been implicated in the activation of matrix metalloproteinase-7 (MMP-7) and oxidation of thiol to cysteine sulfinic acid has been associated with the autolytic cleavage of MMP-7. We have examined the formation of cysteine sulfenic acid in a synthetic peptide PRCGVPDVA, which is a cysteine switch domain of MMP-7 and other matrix metalloproteases. We have prepared the cysteine sulfenic acid containing peptide, PRC(SOH)GVPDVA, by reaction with hydroxyl radicals generated by the Fenton reaction (Fe(+2)/H(2)O(2)). We characterized this modified peptide by tandem mass spectrometry and accurate mass measurement experiments. In addition, we used 7-chloro-4-nitrobenzo-2-oxa-1,3-diazol (NBD-Cl) reagent to form an adduct with PRC(SOH)GVPDVA to provide additional evidence for the viability of PRC(SOH)GVPDVA in solution. We also characterized an intramolecular cysteine sulfinamide cross-link product PRC[S(O)N]GVPDVA based on tandem mass spectrometry and accurate mass measurement experiments. These results contribute to the understanding of a proteolytic cleavage mechanism that is traditionally associated with MMP activation.     

Spectral analytic comparisons for data augmentation

The sandwich algorithm (SA) is an alternative to the data augmentation (DA) algorithm that uses an extra simulation step at each iteration. In this paper, we show that the sandwich algorithm always converges at least as fast as the DA algorithm, in the Markov operator norm sense. We also establish conditions under which the spectrum of SA dominates that of DA. An example illustrates the results.     

Determination of transition and rare earth elements in low-alloy steels as chelates with 4-(2-Thiazolylazo)resorcinol by reversed-phase high performance liquid chromatography

4-(2-Thiazolylazo)resorcinol (TAR) is used as a chelating reagent in the reversed-phase HPLC separation and determination of transition and rare earth elements in low-alloy steels. A precolumn derivatization method is used, followed by separation on an octadecyl-bonded silica stationary phase with a sodium octane-1-sulphonate-tartaric acid mobile phase. The eluted metal chelates are detected by uv-visible spectrophotometry. The requirements for sample preparation, characterization of precolumn derivatization and the optimum conditions for the sensitive detection of metal ions after liquid chromatography (LC) separation are discussed. The influence of the pH of the chelating medium and the eluent, the concentration of TAR and the eluent were investigated. The results are compared with those of other methods such as atomic absorption spectrometry (AAS) and inductively coupled plasma atomic emission spectrometry (ICP-AES).     

Schiff base complexes of zirconium(IV) derived from Zr(acac)4

Summary Zr(acac)₄ undergoes ligand exchanges with various tri- and tetradentate Schiff base ligands, forming compounds of the Zr(L)₂ type (H₂L=tetradentate H₂Sal₂en, H₂Sal₂pn, H₂Sal₂ o-phen and the tridentate H₂SAP) and Zr(acac)₂L (H₂L=H₂SAN. H₂SAE). Upon reaction with a combination of tri- and tetradentate ligands, Zr(acac)₄ yields Zr(L)(L) complexes (H₂L=H₂Sal₂en or H₂Sal₂ o-phen; H₂L=H₂SAN, H₂SAE, or H₂SAP), which have been characterised by analytical data, m.ps, electrical conductivities, i.r. and n.m.r (¹H and¹³C) spectra, they have a coordination number of 6, 7 or 8.     

Determination of arsenic,selenium and mercury in an estuarine sediment standard reference material using flow injection and atomic absorption spectrometry

A flow-injection analysis atomic absorption spectrometric (FIA-AAS) method was developed for the determination of trace amounts of arsenic, selenium and mercury in a proposed estuarine sediment standard reference material (SRM 1646a). The samples were prepared in two manners: a) A wet digestion procedure with HNO₃, H₂SO₄, and HClO₄ using a reflux column and b) A microwave-oven digestion procedure utilizing HNO₃, H₂SO₄, and HCl for As and Se, and HNO₃ for Hg. Microwave-oven digestion provides results comparable to those found by reflux column digestion and reduces the sample preparation time by a factor of 10. The proposed method employing the microwave-oven digestion procedure coupled with FIA-AAS for As and Se, and FIA-CVAAS for Hg, has detection limits of 0.15 ng As/ml, O.17 ng Se/ml and 0.15 ng Hg/ml.On leave from the Defense Metallurgical Research Laboratory, Hyderabad, India     

Characterization of novel oxidation products of cysteine in an active site motif peptide of PTP1B

We investigated the formation of hydroxyl radical (OH^·) and H₂O₂ mediated oxidation products of a synthetic peptide, HCSAGIGRS, which is an active site sequence motif of protein tyrosine phosphatase 1B (PTP1B). We determined that a novel cysteine sulfinamide HC[S(O)N]SAGIGRS is produced in the oxidation reaction by Fenton reagents (Fe⁺²/H₂O₂) as well as by H₂O_2. These products were characterized by tandem mass spectrometry experiments on both singly and doubly charged precursor ions. MS³ experiments using an ion trap instrument as well as LC-MS/MS experiments using a quadrupole time-of-flight (Q-TOF) instrument demonstrated that HC[S(O)N]SAGIGRS is not a water loss product of cysteine sulfinic acid [HC(SO₂H)SAGIGRS]. We also obtained data from tandem mass spectrometry experiments that provided evidence for the existence of stable cysteine sulfenic acid [HC(SOH)SAGIGRS] in solution. A mechanism for the formation of the cysteine sulfinamide product is proposed based on the above experimental results. The preparation and identification of cysteine sulfinamide in this study may provide insight into the mechanism of both OH^· and H₂O₂ induced oxidation reactions of protein tyrosine phosphatases.