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1.
The analytical expansion self-consistent field method was employed to perform ab initio calculations for the ground states of the rare-earth ions, Tm2+, 4f13, 2F, and Tm3+, 4f12, 3H, (Z = 69). In each case the total number of basis functions used in the analytical expansions was 29, distributed as follows: 10, 8, 5, and 6, for the symmetries s, p, d, and f, respectively. All of the orbital exponents of the basis functions were optimized repeatedly, to the extent of the single-precision computer representation. Values of 〈rn〉 for the 4f orbital of both ions are also presented, for the convenience of experimentalists. 相似文献
2.
A di-walled molecular umbrella, composed of two choloyl groups, one spermidine moiety, and a 5-thiol(2-nitrobenzoyl) "handle", was covalently attached to a 16-mer oligonucleotide (S-dT16) through a disulfide bond. Incubation of this conjugate (1) with vesicles made from 1-palmitoyl-2-oleyol-sn-glycero-3-phosphocholine and 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphatidylglycerol (95/5, mol/mol) (200 nm diameter, extrusion) that contained entrapped glutathione (GSH) at 37 degrees C resulted in the liberation of the oligonucleotide and the umbrella-bound 5-mercapto(2-nitrobenzoyl) moiety (USH) via thiolate-disulfide interchange. The appearance of USH, together with the absence of leakage of entrapped GSH and a vesicular capture of the oligonucleotide that matches the extent of USH formation, provides compelling evidence for delivery of S-dT16 into the aqueous compartment of these vesicles. In a sense, the molecular umbrella functions like a "needle" in providing a pathway for the oligonucleotide (the "thread") to cross the membrane. 相似文献
3.
Christopher J. R. Illingworth Sree V. Chintipalli Stefano A. Serapian Andrew D. Miller Vaclav Veverka Mark D. Carr Christopher A. Reynolds 《Journal of computational chemistry》2012,33(16):1440-1447
Sense and antisense peptides, encoded by sense and corresponding antisense DNA strands, are capable of specific interactions that could be a driving force to mediate protein–protein or protein–peptide binding associations. The complementary residue hypothesis suggests that these interactions are founded upon the sum of pairwise interactions between amino acids encoded by corresponding sense and antisense codons. Despite many successful experimental results obtained with the hypothesis, however, the physicochemical basis for these interactions is poorly understood. We examined the potential of the hypothesis for general identification of protein–protein interaction sites, and the possible role of the hypothesis in determining folding in a broad set of protein structures. In addition, we performed a structural study to investigate the binding of a complementary peptide to IL‐1F2. Our results suggest that complementary residue pairs are no more frequent or conserved than average in protein–protein interfaces, and are statistically under‐represented amongst contacting residue pairs in folded protein structures. Although our structural results matched experimental observations of binding between the peptide and IL‐1F2, complementary residue interactions do not appear to be dominant in the bound structure. Overall, our data do not allow us to conclude that the complementary residue hypothesis accounts for specific sense–antisense peptide interactions. © 2012 Wiley Periodicals, Inc. 相似文献
4.
Milan Skalicky Jan Kubes Hajihashemi Shokoofeh Md. Tahjib-Ul-Arif Pavla Vachova Vaclav Hejnak 《Molecules (Basel, Switzerland)》2020,25(22)
There are 11 different varieties of Beta vulgaris L. that are used in the food industry, including sugar beets, beetroots, Swiss chard, and fodder beets. The typical red coloration of their tissues is caused by the indole-derived glycosides known as betalains that were analyzed in hypocotyl extracts by UV/Vis spectrophotometry to determine the content of betacyanins (betanin) and of betaxanthins (vulgaxanthin I) as constituents of the total betalain content. Fields of beet crops use to be also infested by wild beets, hybrids related to B. vulgaris subsp. maritima or B. macrocarpa Guss., which significantly decrease the quality and quantity of sugar beet yield; additionally, these plants produce betalains at an early stage. All tested B. vulgaris varieties could be distinguished from weed beets according to betacyanins, betaxanthins or total betalain content. The highest values of betacyanins were found in beetroots ‘Monorubra’ (9.69 mg/100 mL) and ‘Libero’ (8.42 mg/100 mL). Other beet varieties contained less betacyanins: Sugar beet ‘Labonita’ 0.11 mg/100 mL; Swiss chard ‘Lucullus,’ 0.09 mg/100 mL; fodder beet ‘Monro’ 0.15 mg/100 mL. In contrast with weed beets and beetroots, these varieties have a ratio of betacyanins to betaxanthins under 1.0, but the betaxanthin content was higher in beetcrops than in wild beet and can be used as an alternative to non-red varieties. Stability tests of selected varieties showed that storage at 22 °C for 6 h, or at 7 °C for 24 h, did not significantly reduce the betalain content in the samples. 相似文献
5.
A polymerized monolayer of 5,11,17,23,29,35-hexamercaptomethyl-37,38,40,41,42-hexakis-(1-n hexadecyloxy)calix[6]arene (1) has been synthesized on the surface of an ca. 15 mum-thick film derived from poly[1-(trimethylsilyl)-1-propyne] (PTMSP). This monolayer exhibits a permeation selectivity toward He and SF6 that exceeds Knudsen diffusion. Analogous membranes made from a calix[6]arene that contains amidoxime headgroups (i.e., 2) showed Knudsen diffusion characteristics. 相似文献
6.
Jean-Jacques Aaron Zouhair Mechbal Alain Adenier Cyril Parkanyi Vaclav Kozmik Jiri Svoboda 《Journal of fluorescence》2002,12(2):231-239
The structural and solvent effects on the electronic absorption and fluorescence spectra, and fluorescence quantum yields, of four new fused benzothiophene derivatives, including benzothieno[3,2b]-thiophene (BTT), benzothieno[3,2-b]benzothiophene (BTBT), 6-methoxy[1]benzothieno[3,2b]-thiophene (MeOBTT), and benzothieno[3,2-b]indole (BTI) were investigated at 295 K. The luminescence properties of the corresponding conductive oligomers, poly(BTT) and poly (MeOBTT), electrosynthesized in acetonitrile, were also studied. Satisfactory McRae, Suppan, and Kawski-Chamma-Viallet solvatochromic correlations were established for the four monomers in most solvents. A weak negative solvatochromic behavior was found for these compounds, indicating that their dipole moments are slightly lower in the excited singlet state than in the ground state. Kamlet-Abboud-Taft multiparametric correlations were also obtained for absorption and fluorescence wave numbers and quantum yields, demonstrating the existence of specific solute-solvent interactions. In the case of the oligomers, important red-shifts of the fluorescence emission maxima ( 90–110 nm) relative to the corresponding monomers were observed, which shows the extent of conjugated segments in the oligomer chains. 相似文献
7.
Kundrat O Kroupa J Böhm S Budka J Eigner V Lhotak P 《The Journal of organic chemistry》2010,75(24):8372-8375
Nitration of thiacalix[4]arene, immobilized in the 1,3-alternate conformation, leads regioselectively to meta-substituted products. Depending on the reaction conditions, mono- and dinitro-derivatives can be isolated in acceptable yields. This unique substitution pattern is inaccessible in classical calixarene chemistry, and yields inherently chiral compounds, which makes thiacalixarenes very attractive as building blocks or molecular scaffolds. 相似文献
8.
Frédéric Barbeu Vaclav Sobolik Serguei Martemianov Laurent Gbahoue 《Comptes Rendus Mecanique》2002,330(6):433-436
The present paper demonstrates how the directional characteristics of an actual three-segment electrodiffusional sensor can be calculated from the probe image. It was shown that utilization of ‘ideal’ directional characteristics lead to an important (up to 15°) error in flow angle determination. The directional characteristics calculated from the probe image improve significantly (up to 50%) the accuracy of the flow angle measurements. To cite this article: F. Barbeu et al., C. R. Mecanique 330 (2002) 433–436. 相似文献
9.
Characteristic laser efficiency parameters important to Nd3+ doped in various crystalline materials are analyzed. Nd3+: LaF3 was used as a comparative example. Overall laser-crystal performance contributions are emphasized in discussing each parameter. An overview table was compiled containing parameters for comparison of a wide range of crystalline hosts, according to groups of references. 相似文献
10.
A reference system for DNA replication fidelity was studied by free energy perturbation (FEP) and linear interaction energy (LIE) methods. The studied system included a hydrated duplex DNA with the 5'-CG dangling end of the templating strand, and dCTP4-.Mg2+ or dTTP4-.Mg2+ inserted opposite the dangling G to form a correct (i.e., Watson-Crick) or incorrect (i.e., wobble) base pair, respectively. The average distance between the 3'-terminal oxygen of the primer strand and the alpha-phosphorus of dNTP was found to be 0.2 A shorter for the correct base pair than for the incorrect base pair. Binding of the incorrect dNTP was found to be disfavored by 0.4 kcal/mol relative to the correct dNTP. We estimated that improved binding and more near-attack configurations sampled by the correct base pair should translate in aqueous solution and in the absence of DNA polymerase into a six times faster rate for the incorporation of the correct dNTP into DNA. The accuracy of the calculated binding free energy difference was verified by examining the relative free energy for melting duplex DNA containing GC and GT terminal base pairs flanked by a 5' dangling C. The calculated LIE and FEP free energies of 1.7 and 1.1 kcal/mol, respectively, compared favorably with the experimental estimate of 1.4 kcal/mol obtained using the nearest neighbor parameters. To decompose the calculated free energies into additive electrostatic and van der Waals contributions and to provide a set of rigorous theoretical data for the parametrization of the LIE method, we suggested a variant of the FEP approach, for which we coined a binding-relevant free energy (BRFE) acronym. BRFE approach is characterized by its unique perturbation pathway and by its exclusion of the intramolecular energy of a rigid part of the ligand from the total potential energy. 相似文献