A study of GABA and its analogues using the molecular orbital method

GABA is a major neurotransmitter in the central nervous system. Data on GABA and its analogues calculated by using the ab initio and the MNDO method were compared with data obtained experimentally. The structures of GABA analogues calculated by the ab initio method agree well with the experimental data. This finding suggests the high reliability of this method. However, the structures of GABA analogues calculated by the MNDO method reflect only some aspects of the experimental data. Therefore the MNDO method should be used only for carefully selected chemical compounds.

The amino group in GABA and its analogues was proved to be the major active site. The electrostatic potential around the amino group in these compounds seems to be related to their biological activity. The difference in the electrostatic potential between the receptor binding molecules and the neuronal uptake molecules suggests that the structure of post-synaptic receptors might differ from that of uptake receptors. This finding suggests that there are at least two GABA-A receptors. GABA molecules seem to have a high potential for binding to the two receptors because they are highly flexible and can readily change their conformation. These results indicate a high reliability of the data calculated by the molecular orbital method and suggest that this method provides us with useful information that cannot be obtained experimentally.     

The photochemical isomerization of cross-linked 1,3,5-tristyrylbenzene dendrimer with hula-twist mechanism

A cross-linked 1,3,5-tristyrylbenzene dendrimer 5 was synthesized to study the photochemical isomerization mechanism. On irradiation, 5 isomerized with the quantum yields (Φ_E→Z) of 0.063, which was not very much different from that for a model compound 1 (Φ_E→Z 0.080), supporting a volume-conserving hula-twist (HT) mechanism during the photochemical E-Z isomerization.     

Structure refinement and chemical analysis of Cs3Li(DSO4)4, formerly ‘Cs1.5Li1.5D(SO4)2’

An accurate structure refinement of the deuterated analog of the cesium lithium acid sulfate, formerly identified as ‘Cs_1.5Li_1.5H(SO₄)₂’, has been carried out using neutron diffraction methods. Like the protonated material reported earlier (Merinov et al., Solid State Ionics 69 (1994) 53), the compound is cubic, , however, the correct stoichiometry is Cs₃Li(DSO₄)₄. There are four formula units per unit cell and six atoms in the asymmetric unit. The lattice constant measured in this work is a=11.743(2) Å, comparable to the earlier results. The structure contains one disordered hydrogen bond, formed between O(2) atoms and located on two of the edges of the single LiO₄ tetrahedron. The Li site occupancy is , as is that of the deuterium site. This level of site occupancies is consistent with a structure in which hydrogen bonds are formed only when the lithium site is unoccupied, and explains the otherwise close proximity of the Li and D atoms, 1.394(10) Å. This unusual structural feature furthermore leads to a fixed stoichiometry, as confirmed here by chemical analysis of both the deuterated and protonated materials, despite the partial occupancy of the lithium and deuterium (hydrogen) atom sites.     

Time-dependent density functional theory calculations of the photoabsorption of fluorinated alkanes

Time-dependent density functional theory (TD-DFT) calculations of the transition energies and oscillator strengths of fluorinated alkanes have been performed. The TD-DFT method with the non-local B3LYP potential yields transition energies for the methanes, which are smaller by about 10% as compared to the experimental values. An empirical linear correlation was found between the calculated and experimental transition energies both at the B3LYP/DZ+Ryd(C, F) and B3LYP/cc-pVTZ+Ryd(C, F, H) levels for a total of 19 transitions of the fluorinated methanes with linear correlation coefficients of 0.987 for the former and 0.988 for the latter. This empirical correlation for fluorinated methane molecules is found to agree well with the previously obtained empirical correlations between calculated and experimental values for non-fluorinated molecules. The results show that a single empirical-correlation relationship can be used for both non-fluorinated and fluorinated molecules to predict transition energies. This linear relationship is then used to predict the photoabsorption spectra of ethane, propane, butane, and partially and fully fluorinated derivatives. A key result of these calculations is the dominance of Rydberg transitions in the spectral region of interest.     

Generation of 3-Carbanion Species from 3-Phenylsulfinyl- and 3-Phenylsulfonyl Propionic Acids

During the course of studies on butenolide synthesis¹ we have investigated the utilities of 3-sulfur-functionalized propionic acid derivatives. We report the results with 3-carbanion species obtained from 3-phenylsulfiny1- and 3-phenylsulfonylpropionic acids (1) and (2). These compounds were easily prepared from 3-phenylthiopropionic acid.     

Operating Limits for Stable Growth of Silicon Fibers with Diameter Less Than 150 μm by Modified μ-PD Method

The μ-PD method originally developed for oxide crystals has been modified and applied for filamentary silicon crystal growth. Our main modification of μ-PD method is concerned with an arrangement of melt permeable feeder which is inserted into the nozzle. The feeder finishes by a sharp tip the diameter of which (is almost the same as that of the desired semiconductor fiber, i.e., less than 150 μm. Silicon fibers were grown from the small liquid pool at the end of the feeder. Three types of crucible-die arrangement were designed and tested. The best results were obtained with the help of inclined insert made of graphite fibers because of its ability to quench oscillations and longer operation life. Fiber crystals, 100 μm in diameter and 70 mm in length, have been grown successfully. Small meniscus stability, operating limits of μ-PD method and silicon carbide formation during the growth process are discussed.     

Dopant-pair structures segregated on a hydrogen-terminated Si(100) surface

Novel atomic structures on a H-terminated Si(100)-(2x1)-H surface were found using scanning tunneling microscopy (STM). The structures are distinguishable only from Si dimers in empty-state STM images. They were observed on arsenic- and phosphorus-doped substrates, but not on boron-doped substrates. Surface density of these structures was found to be proportional to the dopant density in the substrate. First-principles calculations clarify that they are consisting of dopant pairs that are segregated from the bulk material. Hydrogen atoms attached to the dopant pair are found to flip between two positions on the surface due to a quantum effect.     

1,3,5-tristyrylbenzene dendrimers: a novel model system to explore oxygen quenching in a highly organized environment

Control of the efficiency of photoisomerization by oxygen was demonstrated for 1,3,5-tristyrylbenzene dendrimers 1-3; the large dendrons do not significantly affect the photochemistry itself due to volume-conserving isomerization mechanisms but may affect the mobility of the molecules.