Observation and analysis of single DNA nano-kinetics by pin-fiber video scope

The nano-kinetic movement of a single DNA molecule was observed and analyzed by a newly developed video-microscope system with an optical fiber, called a pin-fiber video scope. A single lambda-DNA molecule was put in focus using fiber-illumination, and the stretching and shrinking motion was measured. The molecule's kinetics were analyzed by numerical calculations and are discussed. A photocleavage phenomenon of DNA molecules was also visualized by the pin-fiber video scope. The new video-microscope system has the potential to observe and analyze the nano-kinetics of a single molecule.     

Synthesis of 3,3′-(1,6-hexanediyl)bis-pyrimidine derivatives and 3,4-dithia[6.6](1.3)pyrimidinophane

Several 3,3′-(1,6-hexanediyl)bis[6-methyl-2,4(1H,3H)-pyrimidinedione] derivatives ( 4a, 4b , and 4c ) were synthesized from 1,6-(hexanediyl)bis[6-methyl-2H-1,3-oxazine-2,4(3H)-dione] (3) . Compound 4c was converted to 6, which reacted with thiourea giving thiuronium salt 7 . 3,3′-(1,6-Hexanediyl)bis [1-(2-mercaptoethyl)-6-methyl-2,4(1H,3H)-pyrimidinedione] (9) was obtained by the hydrolysis of 7 , and then 9 was oxidized to 12,22-dimethyl-3,4-dithia[6.6] (1.3)-1,2,3,4-tetrahydro-2,4-dioxopyrimidinophane (10) .     

INTRAMOLECULAR TRAPPING OF THE NITRENE GENERATED BY PHOTOLYSIS OF S,S-DIPHENYL N-ACYLSULFILIMINE

Abstract

Various N-acyldiphenylsulfilimines (1a-k) were found to undergo photolysis in argon atmosphere, to afford the corresponding isocyanates, diphenyl sulfide and diphenyl disulfide. Attempts to trap intramolecularly the acylnitrene with olefinic linkage or sulfide afforded small amounts of the trapped products, whereas photolysis of N-mesitoyldiphenyl-sulfilimine (Ia) afforded a C–H inserted product of the nitrene in a substantial yield together with the isocyanate. Benzophenone-sensitized photolysis of Ia indicates that the nitrene generated is a singlet species.     

Observation of Unusual Molecular Diffusion Behaviour below the Lower Critical Solution Temperature of Water/2‐Butoxyethanol Mixtures by using Fluorescence Correlation Spectroscopy

The effect of solute affinity on solute diffusion in binary liquids well below the lower critical solution temperature (LCST) was studied by using fluorescence correlation spectroscopy. We measured the hydrodynamic radii of a hydrophobic and an amphiphilic fluorescent dye under systematic variation of the relative molar fractions of water/2‐butoxyethanol and, for comparison, of water/methanol mixtures, which do not show phase separation. We found that the apparent hydrodynamic radius of the hydrophobic dye almost doubled in water/2‐butoxyethanol, whereas it remained largely unchanged for the amphiphilic dye and in water/methanol mixtures. Our results indicate that the translational diffusion of solutes is influenced by transient local solution structures, even at temperatures well below the LCST. We conclude that, even far below LCST, different solutes can experience different environments in binary liquid mixtures depending on both the solute and solvent properties, all of which impact their reactivity.     

Laser ablation-induced gas and flyer ejection from composite films applied to regulation of a liquid micro-stream

We have developed laser-ignitable gas generating films to control a liquid stream for use in micro processing that can be ignited with both continous wave (CW) and pulsed lasers. Films of 100 m thick polyethylene terephthalate (PET) were coated with mixtures of nitrocellulose, trimethylolethanetrinitrate, and carbon black. A light beam from a Nd:YAG laser diode, or an Ar⁺ laser was focused onto the nitrocellulose layer through the PET substrate to ignite the layer. In the case of CW irradiation the delay time between the onset of irradiation and the ignition of the films was established by measuring the transmission of the laser light passing through the films. Gas generation dynamics were studied as a function of film thickness and irradiation conditions. In the case of pulsed laser irradiation, the dynamics were followed by imaging using a conventional double pulse pump-probe technique, with which it was possible to observe material ejection and the transient disturbance of a micro liquid stream in the path of emitted debris.PACS 79.20.Ds; 41.75.Jv; 61.80.Ba     

Micro-patterning of multiple organic molecules by laser implantation

Micrometer pixelated arrays comprised of different functional organic molecules were formed on a polymer film using a laser implantation and transfer dry processing technique. The spatial distribution of the implanted organic molecules and the extended pattern that they formed could be controlled with high resolution as determined using fluorescence microscopy. The individual molecular implant pixels had a diameter of less than 4 m. This method of molecular manipulation is both precise and reproducible and could therefore be used in many applications such as molecular devices, molecular sensors, non-linear optical devices, drug delivery and opto-electronic displays. PACS 81.05.Lg; 81.16.Mk; 81.65.Cf     

Sub-micrometer patterns of molecular photo-switches using laser induced molecular implantation techniques (LIMIT)

Using laser induced molecular implantation techniques (LIMIT) in thin polymer films highly space selective patterning of photochromic molecules has been created of 800 nm dimensions. In this way diffraction gratings have been fabricated which operate as photo-switching devices. These transient gratings are permanent molecular implants in a polymer films that can be UV-irradiation activated or thermally deactivated. No further grating writing is required for this transient switching effect once the permanent implantation has been made.     

After effects of ec decay of57Co in Mg(1-x)FexSO4.7H2O mixed crystals

After effects due to the EC decay of⁵⁷Co in the mixed crystals (Mg,Fe)SO₄·7H₂O were studied. When the Fe concentrationx=Fe/(Fe+Mg) is 0.4≈0.5, the surroundings of⁵⁷Fe have the characteristics of orthorhombic MgSO₄·7H₂O although the crystal structure is monoclinic. This fact suggests a possibility of transient release of the Jahn-Teller transformation.     

Porphyrin-sensitized laser swelling and ablation of polymer films

Laser-induced morphological changes of poly(methyl methacrylate), poly(N-vinylcarbazole), and gelatin films doped with porphyrins have been studied by etch depth measurement and scanning electron microscopy. An irreversible swelling of the irradiated surface was observed for all films in the case of low laser fluence. The swelling was replaced by ablation when the fluence was increased. The etch depth depends on the irradiation fluence and the dye concentration in the polymer. The observation of the irradiated surfaces suggests that the thermal effect is predominant both for swelling and ablation. The surface temperature at which swelling or ablation is initiated was estimated, assuming that these morphological changes take place at a certain temperature for any dye concentration in each polymer film.     

Mechanistic study of a Pd/C-catalyzed reduction of aryl sulfonates using the Mg-MeOH-NH(4)OAc system

A method for the deoxygenation of phenolic hydroxy groups via aryl triflates or mesylates has been established by using a combination of Pd/C-Mg-MeOH. The addition of NH(4)OAc to the system markedly accelerated the reaction rate and expanded the scope of the reaction. Mechanistic studies suggested that a single-electron transfer process from the Pd(0) center to the benzene ring is involved in the reduction of aryl sulfonates and that NH(4)OAc works as a solubilization reagent of the Mg salt and as an accelerator of the electron transfer, thus enhancing the reaction process. Our method was also applicable to the regioselective deuteration of benzene derivatives with CH(3)OD as the solvent and deuterium source: the original hydroxy group could be efficiently replaced with a deuterium atom.