Detection of the His-heme Fe2+-NO species in the reduction of NO to N2O by ba3-oxidase from thermus thermophilus

Reaction pathways in the enzymatic formation and cleavage of the N-N and N-O bonds, respectively, are difficult to verify without the structure of the intermediates, but we now have such information on the heme a(3)(2+)-NO species formed in the reaction of ba(3)-oxidase with NO from resonance Raman spectroscopy. We have identified the His-heme a(3)(2+)-NO/Cu(B)(1+) species by its characteristic Fe-NO and N-O stretching frequencies at 539 and 1620 cm(-)(1), respectively. The Fe-NO and N-O frequencies in ba(3)-oxidase are 21 and 7 cm(-)(1) lower and higher, respectively, than those observed in Mb-NO. From these results and earlier Raman and FTIR measurements, we demonstrate that the protein environment of the proximal His384 that is part of the Q-proton pathway controls the strength of the Fe-His384 bond upon ligand (CO vs NO) binding. We also show by time-resolved FTIR spectroscopy that Cu(B)(1+) has a much lower affinity for NO than for CO. We suggest that the reduction of NO to N(2)O by ba(3)-oxidase proceeds by the fast binding of the first NO molecule to heme a(3) with high-affinity, and the second NO molecule binds to Cu(B) with low-affinity, producing the temporal co-presence of two NO molecules in the heme-copper center. The low-affinity of Cu(B) for NO binding also explains the NO reductase activity of the ba(3)-oxidase as opposed to other heme-copper oxidases. With the identification of the His-heme a(3)(2+)-NO/Cu(B)(1+) species, the structure of the binuclear heme a(3)-Cu(B)(1+) center in the initial step of the NO reduction mechanism is known.     

Dynamic transcritical bifurcations in a class of slow-fast predator-prey models

We study the stability loss delay phenomenon in a dynamic transcritical bifurcation in a class of three-dimensional prey and predator systems. The dynamics of the predator is assumed to be slow comparatively to the dynamics of the prey. As an application, a well-known model considered by Clark will be discussed.     

Perturbations for linear difference equations

In this paper we study boundary value problems for perturbed second-order linear difference equations with a small parameter. The reduced problem obtained when the parameter is equal to zero is a first-order linear difference equation. The solution is represented as a convergent series in the small parameter, whose coefficients are given by means of solutions of the reduced problem.     

Swelling Behaviour of Isotropic Poly(n-butyl acrylate) Networks in Isotropic and Anisotropic Solvents

Summary: The swelling properties of photochemically crosslinked poly(n-butyl acrylate) (PABu) networks in isotropic and anisotropic solvents were investigated experimentally. The purpose of this study was to examine the swelling kinetics of PABu networks in isotropic solvents and to compare the results obtained which those observed in the case of the low molecular weight liquid crystal 4-cyano-4′-n-pentyl-biphenyl known as 5CB. The phase diagrams were established in terms of composition and temperature for isotropic solvents, as toluene, acetone, cyclohexane, and methanol, and 5CB, using the plateau values corresponding to equilibrium states of swelling. The polymer networks were prepared via free radical polymerization/crosslinking processes by ultraviolet (UV) radiation of initial mixtures made up from a monomer, a crosslinker, and a photoinitiator. PABu networks with several crosslinking densities were formed using different quantities of difunctional monomer hexanedioldiacrylate (HDDA). Immersion of these networks in excess solvent allows measuring the solvent uptake by determination of the weight in isotropic solvents and diameter in an anisotropic solvent (5CB). Swelling data were rationalized by calculating weight and diameter ratios considering swollen to dry network states of the samples.     

Thermal analysis of interpenetrating polymer networks through molecular dynamics simulations: a comparison with experiments

Journal of Thermal Analysis and Calorimetry - In this work, we verified the synthesis of a novel sequential interpenetrating polymer network, composed of poly(2-hexyl-ethylacrylate) and...     

2,4-Disubstituted Pyrrolo[2,3-d]pyrimidine α-D- and β-D-Ribofuranosides Related to 7-Deazaguanosine

Nucleobase-anion glycosylation (KOH, tris[2-(2-methoxyethoxy)ethyl]amine (TDA-1), MeCN) of the pyrrolo[2,3-d]pyrimidines 4a – d with 5-O-[(1,1-dimethylethyl)dimethylsilyl]-2,3-O-(1-methylethylidene)-α-D -ribo-furanosyl chloride ( 5 ) gave the protected β-D -nucleosides 6a – d stereoselectively (Scheme 1). Contrary, the β-D -halogenose 8 yielded the corresponding α-D -nucleosides ( 9a and 9b ) apart from minor amounts of the β-D -anomers. The deprotected nucleosides 10a and 11a were converted into 4-substituted 2-aminopyrrolo[2,3-d]-pyrimidine β-D -ribofuranosides 1 . 10c , 12 , 14 , and 16 and into their α-D -anomers, respectively (Scheme 2). From the reaction of 4b with 5 , the glycosylation product 7 was isolated, containing two nucleobase moieties.     

Calorimetric studies of poly (2-phenoxyethylacrylate)/5CB mixtures

The thermophysical properties of mixtures of poly (2-phenoxyethylacrylate) and 4-cyano-4′-pentyl-biphenyl, 5CB, are investigated using polarizing optical microscopy (POM) and differential scanning calorimetry (DSC). The polymer has a molar mass M _w = 181 000 g mol ^-1 the low molecular mass liquid crystal exhibits a nematic to isotropic transition at 35.3°C and crystallizes below 23°C. The phase diagram exhibits miscibility gaps in certain regions of temperature and composition where coexisting nematic and isotropic phases are found. From a practical point of view when considering the electro-optical applications of these systems, it proves to be useful to know precisely the amount of small liquid crystal molecules dissolved in the polymer matrix and the concentration of polymer in the nematic phase. The former quantity has a mechanical impact due to a plasticizing effect, an optical impact since it changes the polymer refractive index, while the polymer in the nematic phase shifts the transition temperatures influencing the electro-optical response of the liquid crystal. The present work addresses these important aspects using POM and DSC.     

Calorimetric studies of poly (2-phenoxyethylacrylate)/5CB mixtures

The thermophysical properties of mixtures of poly (2-phenoxyethylacrylate) and 4-cyano-4'-pentyl-biphenyl, 5CB, are investigated using polarizing optical microscopy (POM) and differential scanning calorimetry (DSC). The polymer has a molar mass M w = 181 000 g mol -1 ; the low molecular mass liquid crystal exhibits a nematic to isotropic transition at 35.3°C and crystallizes below 23°C. The phase diagram exhibits miscibility gaps in certain regions of temperature and composition where coexisting nematic and isotropic phases are found. From a practical point of view when considering the electro-optical applications of these systems, it proves to be useful to know precisely the amount of small liquid crystal molecules dissolved in the polymer matrix and the concentration of polymer in the nematic phase. The former quantity has a mechanical impact due to a plasticizing effect, an optical impact since it changes the polymer refractive index, while the polymer in the nematic phase shifts the transition temperatures influencing the electro-optical response of the liquid crystal. The present work addresses these important aspects using POM and DSC.