Human Y-chromosome haplotyping by allele-specific polymerase chain reaction

We describe the application of allele-specific PCR (AS-PCR) for screening biallelic markers, including SNPs, within the nonrecombining region of the human Y-chromosome (NRY). The AS-PCR method is based on the concept that the perfectly annealed primer-template complex is more stable, and therefore, more efficiently amplified under the appropriate annealing temperature than the complex with a mismatched 3'-residue. Furthermore, a mismatched nucleotide at the primer's 3'-OH end provides for a poor extension substrate for Taq DNA polymerase, allowing for discrimination between the two alleles. This method has the dual advantage of amplification and detection of alleles in a single expeditious and inexpensive procedure. The amplification conditions of over 50 binary markers, mostly SNPs, that define the major Y-haplogroups as well as their derived lineages were optimized and are provided for the first time. In addition, artificial restriction sites were designed for those markers that are not selectively amplified by AS-PCR. Our results are consistent with allele designations derived from other techniques such as RFLP and direct sequencing of PCR products.     

Flexible Molecular Precursors for Selective Decomposition to Nickel Sulfide or Nickel Phosphide for Water Splitting and Supercapacitance

Herein, the synthesis of three nickel(II) dithiophosphonate complexes of the type [Ni{S₂P(OR)(4-C₆H₄OMe)}₂] [R=H ( 1 ), C₃H₇ ( 2 )] and [Ni{S₂P(OR)(4-C₆H₄OEt}₂] [R=(C₆H₅)₂CH ( 3 )] is described; their structures were confirmed by single-crystal X-ray studies. These complexes were subjected to surfactant/solvent reactions at 300 °C for one hour as flexible molecular precursors to prepare either nickel sulfide or nickel phosphide particles. The decomposition of complex 2 in tri-octylphosphine oxide/1-octadecene (TOPO/ODE), TOPO/tri-n-octylphosphine (TOP), hexadecylamine (HDA)/TOP, and HDA/ODE yielded hexagonal NiS, Ni₂P, Ni₅P₄, and rhombohedral NiS, respectively. Similarly, the decomposition of complex 1 in TOPO/TOP and HDA/TOP yielded hexagonal Ni₂P and Ni₅P₄, respectively, and that of complex 3 in similar solvents led to hexagonal Ni₅P₄, with TOP as the likely phosphorus provider. Hexagonal NiS was prepared from the solvent-less decomposition of complexes 1 and 2 at 400 °C. NiS (rhom) had the best specific supercapacitance of 2304 F g⁻¹ at a scan rate of 2 mV s⁻¹ followed by 1672 F g⁻¹ of Ni₂P (hex). Similarly, NiS (rhom) and Ni₂P (hex) showed the highest power and energy densities of 7.4 kW kg⁻¹ and 54.16 W kg⁻¹ as well as 6.3 kW kg⁻¹ and 44.7 W kg⁻¹, respectively. Ni₅P₄ (hex) had the lowest recorded overpotential of 350 mV at a current density of 50 mA cm⁻² among the samples tested for the oxygen evolution reaction (OER). NiS (hex) and Ni₅P₄ (hex) had the lowest overpotentials of 231 and 235 mV to achieve a current density of 50 mA cm⁻², respectively, in hydrogen evolution reaction (HER) examinations.     

Total Synthesis of (−)‐Perezoperezone through an Intermolecular [5+2] Homodimerization of Hydroxy p‐Quinone

The first copper‐catalyzed intermolecular [5+2] homodimerization of hydroxy p‐quinone is presented, furnishing bicyclo[3.2.1]octadienone core structures in typically good yields and excellent diastereoselectivities. Applying this synthetic approach enables a concise nine‐step total synthesis of (?)‐perezoperezone from commercially available 3,5‐dimethoxytoluene.     

Hidden Hypergraphs,Error-Correcting Codes,and Critical Learning in Hopfield Networks

In 1943, McCulloch and Pitts introduced a discrete recurrent neural network as a model for computation in brains. The work inspired breakthroughs such as the first computer design and the theory of finite automata. We focus on learning in Hopfield networks, a special case with symmetric weights and fixed-point attractor dynamics. Specifically, we explore minimum energy flow (MEF) as a scalable convex objective for determining network parameters. We catalog various properties of MEF, such as biological plausibility, and then compare to classical approaches in the theory of learning. Trained Hopfield networks can perform unsupervised clustering and define novel error-correcting coding schemes. They also efficiently find hidden structures (cliques) in graph theory. We extend this known connection from graphs to hypergraphs and discover n-node networks with robust storage of 2Ω(n1−ϵ) memories for any ϵ>0. In the case of graphs, we also determine a critical ratio of training samples at which networks generalize completely.     

Synthesis of Quaternary Spirooxindole 2H-Azirines under Batch and Continuous Flow Condition and Metal Assisted Umpolung Reactivity for the Ring-Opening Reaction

An efficient and new approach for the synthesis of spirooxindole 2H-azirines via intramolecular oxidative cyclization of 3-(amino(phenyl)methylene)-indolin-2-one derivatives in the presence of I₂ and Cs₂CO₃ under batch/continuous flow is described. This method is mild and facile to synthesize a variety of spirooxindole 2H-azirines derivatives in gram-scale. Furthermore, we have synthesized spiroaziridine derivatives from spirooxindole 2H-azirines derivatives via addition of Grignard reagent. In addition, we discloses an metal assisted attack of Grignard nucleophile at N-centre rather than C- of the spirooxindole 2H-azirines, which concurrently underwent ring opening of transient aziridines to afford N-substituted Z-3-(aminophenyl)indolin-2-one. A plausible mechanism for azirination and ring-opening reaction is also presented.