Three dimensional model of severe acute respiratory syndrome coronavirus helicase ATPase catalytic domain and molecular design of severe acute respiratory syndrome coronavirus helicase inhibitors

The modeling of the severe acute respiratory syndrome coronavirus helicase ATPase catalytic domain was performed using the protein structure prediction Meta Server and the 3D Jury method for model selection, which resulted in the identification of 1JPR, 1UAA and 1W36 PDB structures as suitable templates for creating a full atom 3D model. This model was further utilized to design small molecules that are expected to block an ATPase catalytic pocket thus inhibit the enzymatic activity. Binding sites for various functional groups were identified in a series of molecular dynamics calculation. Their positions in the catalytic pocket were used as constraints in the Cambridge structural database search for molecules having the pharmacophores that interacted most strongly with the enzyme in a desired position. The subsequent MD simulations followed by calculations of binding energies of the designed molecules were compared to ATP identifying the most successful candidates, for likely inhibitors—molecules possessing two phosphonic acid moieties at distal ends of the molecule.     

Compositional control of electrical transport properties in the new series of defect thiospinels, Ga1−xGexV4S8−δ (0≤x≤1)

A new series of non-stoichiometric sulfides Ga_1−xGe_xV₄S_8−δ (0≤x≤1; δ≤0.23) has been synthesized at high temperatures by heating stoichiometric mixtures of the elements in sealed quartz tubes. The samples have been characterized by powder X-ray diffraction, SQUID magnetometry and electrical transport-property measurements. Structural analysis reveals that a solid solution is formed throughout this composition range, whilst thermogravimetric data reveal sulfur deficiency of up to 2.9% in the quaternary phases. Magnetic measurements suggest that the ferromagnetic behavior of the end-member phase GaV₄S₈ is retained at x≤0.7; samples in this composition range showing a marked increase in magnetization at low temperatures. By contrast Ga_0.25Ge_0.75V₄S_8−δ appears to undergo antiferromagnetic ordering at ca. 15 K. All materials with x≠1 are n-type semiconductors whose resistivity falls by almost six orders of magnitude with decreasing Ga content, whilst the end-member phase GeV₄S_8−δ is a p-type semiconductor. The results demonstrate that the physical properties are determined principally by the degree of electron filling of narrow-band states arising from intracluster V-V interactions.     

Does the low optical band gap of yellow Bi<Subscript>3</Subscript>YO<Subscript>6</Subscript> guarantee the photocatalytical activity under visible light illumination?

Bi₃YO₆, which is known as an ionic conductor, was tested here as an electrode and photoanode in contact with aqueous electrolytes. Bi₃YO₆ was deposited onto the Pt substrate and the such prepared electrode was polarized in various aqueous electrolytes. The optical energy band gap of the material equal to 1.89 eV was determined using the Kubelka-Munk function resulting from the UV-Vis spectrum (allowed indirect transition) and also was calculated using the semi-empirical PM7 method (3.38 eV of HOMO-LUMO energy gap). Despite the yellow color of Bi₃YO₆, the tested material exhibits photoelectroactivity only in the UV range of electromagnetic radiation. The anodic photocurrent characteristic for n-type metal oxide semiconductors was recorded. The electrode exhibits diffusion-controlled cathodic activity while polarized in chloride-free aqueous electrolytes.     

Optimization of boron-doping process of titania nanotubes via electrochemical method toward enhanced photoactivity

In this work, we were focused on the development of the electrochemical approach resulting in a stable boron doping of titania nanotubes. The doping procedure concerns anodic polarization of as-anodized titania in a H₃BO₃ solution acting as n boron precursor. The series of attempts were taken in order to elaborate the most beneficial doping conditions. The parameters of electrochemical doping allowing to obtain boron-doped titania characterized by the highest photoconversion efficiency are as follows: reaction voltage 1.8 V, process duration 0.5 h, and the concentration of boric acid 0.5 M. Spectroscopy techniques such as UV-vis, X-ray diffraction, photoluminescence emission, and X-ray photoelectron spectroscopy were used to characterize the absorbance capability and the crystalline phase, to confirm the presence of boron atoms and to study the nature of chemical compounds, respectively. The well-ordered structure of titania and resistance of its morphology toward electrochemical treatment in H₃BO₃ were confirmed by scanning electron microscopy images. However, cyclic voltammetry and electrochemical impedance spectroscopy studies showed the significant difference in conductivity and capacitance between doped and pristine titania. Moreover, the photocurrent densities of the B-doped sample were about seven times higher in comparison with those generated by the pure titania nanotube electrode.

     

Optimization of electrochemical doping approach resulting in highly photoactive iodine-doped titania nanotubes

The paper focuses on the optimization procedure concerning the synthesis method resulting in highly ordered titania nanotubes doped with iodine atoms. The doping process was based on the electrochemical treatment of a titania nanotube layer immersed in a potassium iodide (KI) solution acting as an iodine precursor. A number of endeavors were undertaken in order to optimize the doping conditions. Electrolyte concentration, reaction voltage, and time/duration were the main factors that influenced the iodine (I)-doping effect on the photoactivity. The parameters of electrochemical doping that result in a material characterized by the highest photocurrent density are as follows: reaction voltage of 1.5 V, duration of 15 min, and 0.1 M KI. Different spectroscopic techniques, i.e., UV–Vis spectroscopy, Raman spectroscopy, and X-ray photoelectron spectroscopy were used to characterize the absorbance capability and the crystalline phase, to confirm the presence of iodine atoms and to study the nature of chemical compounds. The morphology inspection performed by means of scanning electron microscopy shows that the doping process does not affect the ordered tubular architecture. The photocurrent densities of the I-doped sample were six times higher in comparison to those generated by the pure titania nanotube electrode. Moreover, doped samples act as a much better catalyst in the photodegradation process of methylene blue and formation of hydroxyl radicals (•OH) than undoped samples.

     

The binary system PbO - BiVO4

Phase equilibria established in the PbO - BiVO₄ system over the whole component concentration range up to 1000°C have been investigated. A phase diagram has been constructed using DTA and XRD.