Mapping of possible prion protein self-interaction domains using peptide arrays

Background  

The common event in transmissible spongiform encephalopathies (TSEs) or prion diseases is the conversion of host-encoded protease sensitive cellular prion protein (PrP^C) into strain dependent isoforms of scrapie associated protease resistant isoform (PrP^Sc) of prion protein (PrP). These processes are determined by similarities as well as strain dependent variations in the PrP structure. Selective self-interaction between PrP molecules is the most probable basis for initiation of these processes, potentially influenced by chaperone molecules, however the mechanisms behind these processes are far from understood. We previously determined that polymorphisms do not affect initial PrP^C to PrP^Sc binding but rather modulate a subsequent step in the conversion process. Determining possible sites of self-interaction could elucidate which amino acid(s) or amino acid sequences contribute to binding and further conversion into other isoforms. To this end, ovine – and bovine PrP peptide-arrays consisting of 15-mer overlapping peptides were probed with recombinant sheep PrP^C fused to maltose binding protein (MBP-PrP).     

Thermal characteristics of solid-solid phase transitions in long-chain dialkyl ammonium salts

A series of symmetrical dialkyl ammonium salts, DC_nX, has been prepared and characterized with respect to temperature and enthalpy of solid-solid phase transitions, temperature of melting, thermal stability as well as the reversibility of the phase transitions. The number of carbon atoms, C_n, was varied between 8 and 18 and as anions X halides, nitrate, chlorate, perchlorate and hydrogen sulphate had been chosen. In dependence on chain length and anion type transition temperatures from 20 to 100 °C were observed. Mass specific solid-solid transition enthalpies reach values of 185 J g⁻¹, which makes this class of substances attractive for heat storage applications. The influence of anion type on the transition enthalpies is explained in terms of packing requirements, hydrogen bond network formation and contributions from hindered anion rotation.     

A polarographic study of propene-maleic anhydride copolymers

The polarographic behaviour of hydrolyzed propene-maleic anhydride copolymers in the interval pH 2.0–11.0 has been investigated by differential pulse polarography in aqueous lithium chloride solution at 25°C. In dependence on the pH-value, one, two or three signals, belonging to the acid groups in the copolymer, appear in the polarograms. Three apparent polarographic acid constants have been determined graphically from the changes in the half-wave potential of the separate peaks in correlation with pH.     

Bricks and mortar of the epidermal barrier

A specialized tissue type, the keratinizing epithelium, protects terrestrial mammals from water loss and noxious physical, chemical and mechanical insults. This barrier between the body and the environment is constantly maintained by reproduction of inner living epidermal keratinocytes which undergo a process of terminal differentiation and then migrate to the surface as interlocking layers of dead stratum corneum cells. These cells provide the bulwark of mechanical and chemical protection, and together with their intercellular lipid surroundings, confer water-impermeability. Much of this barrier function is provided by the cornified cell envelope (CE), an extremely tough protein/lipid polymer structure formed just below the cytoplasmic membrane and subsequently resides on the exterior of the dead cornified cells. It consists of two parts: a protein envelope and a lipid envelope. The protein envelope is thought to contribute to the biomechanical properties of the CE as a result of cross-linking of specialized CE structural proteins by both disulfide bonds and N(epsilon)-(gamma-glutamyl)lysine isopeptide bonds formed by transglutaminases. Some of the structural proteins involved include involucrin, loricrin, small proline rich proteins, keratin intermediate filaments, elafin, cystatin A, and desmosomal proteins. The lipid envelope is located on the exterior of and covalently attached by ester bonds to the protein envelope and consists of a monomolecular layer of omega-hydroxyceramides. These not only serve of provide a Teflon-like coating to the cell, but also interdigitate with the intercellular lipid lamellae perhaps in a Velcro-like fashion. In fact the CE is a common feature of all stratified squamous epithelia, although its precise composition, structure and barrier function requirements vary widely between epithelia. Recent work has shown that a number of diseases which display defective epidermal barrier function, generically known as ichthyoses, are the result of genetic defects of the synthesis of either CE proteins, the transglutaminase 1 cross-linking enzyme, or defective metabolism of skin lipids.     

Studies on photoinduced effects in pulse-electrodeposited Ag/Hg-1212/CdSe hetero-nanostructures

Metal/superconductor/semiconductor (Ag/Hg-1212/CdSe) hetero-nanostructures have been fabricated using pulse-electrodeposition technique and are characterized by X-ray diffraction (XRD), full-width at half-maximum (FWHM) and scanning electron microscopy (SEM) studies. The junction capacitance of Ag/Hg-1212, Hg-1212/CdSe and Ag/Hg-1212/CdSe heterojunctions is measured in dark and under laser irradiation at room temperature. The nature of the junction formed and built-in-junction potentials were determined. The increase in carrier concentration across the junction due to photo-irradiation has been observed.     

Effect of laser irradiation of C-V characteristics of electrodeposited Ag/Tl-2223/CdSe hetero-nanostructures

One of the innovative technological directions for the high-temperature superconductors has been persued by fabricating the heteroepitaxial multilayer structures such as superconductor-semiconductor heterostructures. In the present investigation, metal/superconductor/semiconductor (Ag/Tl-2223/CdSe) hetero-nanostructures have successfully been fabricated using dc electrodeposition technique and were characterized by X-ray diffraction (XRD), full-width at half-maximum (FWHM) and scanning electron microscopy (SEM) studies. The measurement of junction capacitance as a function of biasing voltage was used for the estimation of junction built-in-potential (V _D) and to study the charge distribution in a heterojunction. The Mott-Schottky plots were measured for each junction in dark and under the photo-irradiation. The effect of laser irradiation on C-V characteristics of hetero-nanostructure has been studied.     

The influence of cations on the dissociation behaviour of copolymers of propene and maleic acid and their modified products with taurine in salt-free solution

Potentiometric and conductometric titrations were used to study the dissociation behaviour of poly(propene-co-maleic acid) and poly(propene-co-maleic acid) modified with various contents of taurine (2-aminoethanesulfonic acid) in salt-free solution. Copolymers of propene and maleic acid with different molecular weights were titrated with LiOH, NaOH, and KOH. The influence of molecular weight on pK_a is ascertainable in both the first and second dissociation step. Of the various alkali metal cations studied, lithium had the most significant effect on the dissociation behaviour. The acidic strength decreased in the order lithium > sodium ≥ potassium. After insertion of sulfonic acid groups into poly(propene-co-maleic acid), the influence of strong acidic groups on the dissociation behaviour of carboxylic groups was studied. The contents of taurine were 10, 25, and 50 mol%. The second dissociation step was analyzed in this case. The pK_a values increased with increasing content of taurine for titrations with LiOH and KOH, but not NaOH. When NaOH was used, the pK_a decreases if the polymer was modified with 10% taurine. Higher taurine contents had no influence on the magnitude of pK_a. The results demonstrate the strong influence of short-range electrostatic interactions on the dissociation behaviour of weak polyacids. © 1999 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 37: 1949–1955, 1999     

Vibrational rate enhancement in the reaction OH + H2(ν = 1) → H2O + H

The rate constant for the reaction between OH and vibrationally excited H₂, OH + H₂(ν = 1)→H₂O + H, has been measured directly at 298 K. k₀₁ is found to be (7.5±3)×10^?13 cm³/molecules, corresponding to a vibrational rate enhancement of k₀₁/k₀₀ = (1.2 ± 0.4) × 10².     

Glycopeptide and Oligosaccharide Libraries

Despite the burgeoning interest in the various biological functions and consequent therapeutic potential of the vast number of oligosaccharides found in nature on glycoproteins and cell surfaces, the development of combinatorial carbohydrate chemistry has not progressed as rapidly as expected. The reason for this imbalance is rooted in the difficulty of oligosaccharide assembly and analysis that renders synthesis a rather cumbersome endeavor. Parallel approaches that generate series of analogous compounds rather than real libraries have therefore typically been used. Since generally low affinity is obtained for interactions between carbohydrate receptors and modified oligosaccharides designed as mimetics of natural carbohydrate ligands, glycopeptides have been explored as alternative mimics. Glycopeptides have been proven in many cases to be superior ligands with higher affinity for a receptor than the natural carbohydrate ligand. High-affinity glycopeptide ligands have been found for several types of receptors including the E-, P-, and L-selectins, toxins, glycohydrolases, bacterial adhesins, and the mannose-6-phosphate receptor. Furthermore, the assembly of glycopeptides is considerably more facile than that of oligosaccharides and the process can be adapted to combinatorial synthesis with either glycosylated amino acid building blocks or by direct glycosylation of peptide templates. The application of the split and combine approach using ladder synthesis has allowed the generation of very large numbers of compounds which could be analyzed and screened for binding of receptors on solid phase. This powerful technique can be used generally for the identification and analysis of the complex interaction between the carbohydrates and their receptors.