Superdense dark matter clumps from superheavy particles

We describe some specific but reasonable conditions for the formation of superdense clumps (or minihalos) of dark matter. Such clumps can be produced by several mechanisms, most notably by spiky features in the spectrum of density perturbations. Being produced very early during the radiation-dominated epoch, these clumps evolve as isolated objects. They do not belong to hierarchical structures for a long time after production and are therefore not destroyed by tidal interactions during the formation of larger structures. If the clumps are constituted of superheavy dark matter particles, then the evolution of their central part can lead to a “gravithermal catastrophe,” increasing the central density and thus the annihilation signal. As a result, annihilations of superheavy neutralinos in dense clumps may lead to observable fluxes of annihilation products in the form of ultrahigh-energy particles.     

Support Varieties for Selfinjective Algebras

Support varieties for any finite dimensional algebra over a field were introduced in (Proc. London Math. Soc. 88 (3) (2004) 705–732) using graded subalgebras of the Hochschild cohomology ring. We mainly study these varieties for selfinjective algebras under appropriate finite generation hypotheses. Then many of the standard results from the theory of support varieties for finite groups generalize to this situation. In particular, the complexity of the module equals the dimension of its corresponding variety, all closed homogeneous varieties occur as the variety of some module, the variety of an indecomposable module is connected, the variety of periodic modules are lines and for symmetric algebras a generalization of Webbs theorem is true. As a corollary of a more general result we show that Webbs theorem generalizes to finite dimensional cocommutative Hopf algebras.Received November 2003Mathematics Subject Classifications (2000) Primary: 16E40, 16G10, 16P10, 16P20; Secondary: 16G70.     

3D ultrasound reconstruction algorithms from analog and digital data

Freehand 3D ultrasound is increasingly being introduced in the clinic for diagnostics and image-assisted interventions. Various algorithms exist for combining 2D images of regular ultrasound probes to 3D volumes, being either voxel-, pixel- or function-based. Previously, the most commonly used input to 3D ultrasound reconstruction has been digitized analog video. However, recent scanners that offer access to digital image frames exist, either as processed or unprocessed data. To our knowledge, no comparison has been performed to determine which data source gives the best reconstruction quality. In the present study we compared both reconstruction algorithms and data sources using novel comparison methods for detecting potential differences in image quality of the reconstructed volumes. The ultrasound scanner used in this study was the Sonix RP from Ultrasonix Medical Corp (Richmond, Canada), a scanner that allow third party access to unprocessed and processed digital data. The ultrasound probe used was the L14-5/38 linear probe. The assessment is based on a number of image criteria: detectability of wire targets, spatial resolution, detectability of small barely visible structures, subjective tissue image quality, and volume geometry. In addition we have also performed the more “traditional” comparison of reconstructed volumes by removing a percentage of the input data. By using these evaluation methods and data from the specific scanner, the results showed that the processed video performed better than the digital scan-line data, digital video being better than analog video. Furthermore, the results showed that the choice of video source was more important than the choice of tested reconstruction algorithms.     

Limits of Pure-Injective Cotilting Modules

The set of pure-injective cotilting modules over an artin algebra is shown to have a monoid structure. This monoid structure does not restrict down to a monoid structure on the finitely generated cotilting modules in general, but it does whenever the algebra is of finite representation type. Pure-injective cotilting modules are also constructed from any set of finitely generated cotilting modules with bounded injective dimension. Presented by Y. Drozd Mathematics Subject Classifications (2000) 16G10, 16P20, 16E30.     

Graded and Koszul Categories

Koszul algebras have arisen in many contexts; algebraic geometry, combinatorics, Lie algebras, non-commutative geometry and topology. The aim of this paper and several sequel papers is to show that for any finite dimensional algebra there is always a naturally associated Koszul theory. To obtain this, the notions of Koszul algebras, linear modules and Koszul duality are extended to additive (graded) categories over a field. The main focus of this paper is to provide these generalizations and the necessary preliminaries.     

Protein-bound tyrosine oxidation,nitration and chlorination by-products assessed by ultraperformance liquid chromatography coupled to tandem mass spectrometry

Background

Free radicals cause alterations in cellular protein structure and function. Oxidized, nitrated, and chlorinated modifications of aromatic amino acids including phenylalanine and tyrosine are reliable biomarkers of oxidative stress and inflammation in clinical conditions.

Objective

To develop, validate and apply a rapid method for the quantification of known hallmarks of tyrosine oxidation, nitration and chlorination in plasma and tissue proteins providing a snapshot of the oxidative stress and inflammatory status of the organism and of target organs respectively.

Material and Methods

The extraction and clean up procedure entailed protein precipitation, followed by protein re-suspension and enzymatic digestion with pronase. An Ultra Performance Liquid Chromatography–tandem Mass Spectrometry (UPLC-MS/MS) method was developed to quantify protein released ortho-tyrosine (o-Tyr), meta-tyrosine (m-Tyr), 3-nitrotyrosine (3NO₂-Tyr) and 3-chlorotyrosine (3Cl-Tyr) as well as native phenylalanine (Phe) and tyrosine (p-Tyr) in plasma and tissue from a validated hypoxic newborn piglet experimental model.

Results

In plasma there was a significant increase in the 3NO₂-Tyr/p-Tyr ratio. On the other hand m-Tyr/Phe and 3Cl-Tyr/p-Tyr ratios were significantly increased in liver of hypoxic compared with normoxic animals. Although no significant differences were found in brain tissue, a clear tendency to increased ratios was observed under hypoxic conditions.

Conclusions

UPLC-MS/MS has proven suitable for the analysis of plasma and tissue samples from newborn piglets. The analysis of biomarkers of protein oxidation, nitration and chlorination will be applied in future studies aiming to provide a deeper insight into the mechanisms of oxidation-derived protein modification caused during neonatal asphyxia and resuscitation.     

Heat-induced retrieval of immunogold labeling for nucleobindin and osteoadherin from Lowicryl sections of bone

The main purpose of this study was to examine whether antigens can be retrieved by heating Lowicryl sections of paraformaldehyde-fixed (PFF) tissues. Thus the intensity of the immunogold signal for two bone proteins (Nucleobindin (Nuc) and osteoadherin (OSAD)) was compared in retrieved and non-retrieved sections of PFF rat bone. As an additional experiment, the effect of antigen retrieval (for Nuc) in sections of tissue primary stabilized by high pressure freezing with subsequent freeze substitution (HPF-FS) was studied. Finally, the tissue distribution patterns of Nuc labeling were compared in non-retrieved HPF-FS sections to that of retrieved and non-retrieved PFF sections. Antigen retrieval in Lowicryl sections of PFF tissues showed significantly enhanced labeling intensity for both proteins in all compartments where they are known to occur. Retrieved PFF Lowicryl sections showed only minor ultrastructural differences compared to non-retrieved ones. Retrieval of HPF-FS sections exhibited no enhancement of labeling but rather a slight reduction, which was significant in the cytoplasm and in cartilage. Furthermore, striking ultrastructural differences were observed in retrieved HPF-FS sections compared to non-retrieved ones with loss of coherence and structure in sections subjected to heating. Comparison of the distribution patterns of Nuc in the sections of PFF and HPF-FS tissues showed discrepancy in most compartments. Antigen retrieval by heating Lowicryl sections of PFF tissues significantly enhances immunogold labeling in all cell compartments where the bone proteins are known to occur. However, the procedure may distort the tissue distribution pattern of bone proteins.