Signal losses in pesticide analysis using the broadband isolation waveform in a commercial quadrupole ion trap to accomplish precursor ion isolation in tandem mass spectrometry

Signal losses due to precursor ion isolation in a quadrupole-ion-trap mass spectrometer were studied using selected pesticides as model compounds. These signal losses originate from isolations of ion populations employing the broadband isolation (bbiso) waveform used in the Varian quadrupole ion-trap precursor ion isolation protocol. Signal losses were found to be ‘precursor ion structure’ dependent upon isolation using the bbiso. The effect of the bbiso waveform on the ionic structure and nature of substituents on the precursor ion was investigated. Isolation of old electron radical molecular ions of the type [M^+?] showed remarkable signal losses compared with isolation of fragment ions derived from the same compounds. The impact of the bbiso waveform on the response of the instrument using mass spectrometry/mass spectrometry and the bbiso waveform was also examined. The response of the instrument as related to the calculated Instrument Detection Limits was observed to parallel ion population losses.     

Enhanced signal generation for use in the analysis of synthetic pyrethroids using chemical ionization tandem quadrupole ion trap mass spectrometry

Synthetic pyrethroids fragment extensively under electron ionization (EI) conditions to give low mass ions, most of them with the same m/z ratios. This fragmentation is primarily due to the labile ester linkage found in these compounds. In this research we established the best gas chromatography (GC) conditions in the EI mode that served as a benchmark in the development of a chemical ionization (CI) protocol for ten selected synthetic pyrethroids. Based on proton affinity data, several reagent gases were evaluated in the positive CI ionization mode. Methanol was found to produce higher average ion counts relative to the other gases evaluated, which led to the development of an optimized method consisting of selective ejection chemical ionization (SECI) and MS/MS. Standard stainless steel ion trap electrodes produced significant degradation of chromatographic performance on late eluting compounds, which was attributed to electrode surface chemistry. A dramatic improvement in signal-to-noise (S/N) ratios was observed when the chromatographically inert Silcosteel® coated electrodes were used. The resulting method, that has significant S/N ratio improvements resulting from a combination of septum programmable injections (SPI), optimized CI and inert Silcosteel®-coated electrodes, was used to determine instrument detection limits.     

Applications of Gas Chromatography–Mass Spectrometry (GC–MS): An Examination of Selected African Cases

As a result of the new economic order in Africa, scientists face enormous challenges due to an increase in socio and economic activities. Gas chromatography–mass spectrometry (GC–MS) will be expected to play a big role in providing some of the solutions to the challenges. Up to now, applications of GC–MS in Africa have focused on profiling natural products for their chemical composition as seen from the number of papers published between 2005 and 2011, i.e. at approximately 62 % of the total. In order to meet the new challenges, a paradigm shift is suggested in the design of research projects. Some economic activities envisaged to boom are food and beverage production for local consumption and for export to markets in the developed world. To meet the requirements of these markets, monitoring pesticides and metabolites of veterinary drugs and other toxins in food will become paramount. Africa also needs to put stringent environmental monitoring policies in place. This will aid remediation following accidental or intentional spillages of chemicals not benign to the environment.

     

Pre-electrospray ionisation manifold methylation and post-electrospray ionisation manifold cleavage/ion cluster formation observed during electrospray ionisation of chloramphenicol in solutions of methanol and acetonitrile for liquid chromatography-mass spectrometry employing a commercial quadrupole ion trap mass analyser

We have observed unusual mass spectra of chloramphenicol (CAP) in solutions of methanol or acetonitrile showing intense ions at m/z 297, m/z 311, m/z 325 and m/z 339. The observed ions were different from those which are traditionally observed in the full scan ESI mass spectra of CAP with ions of m/z 321, m/z 323 and m/z 325. We have evidence to show that this process starts with offline methylation of CAP in solutions of methanol or acetonitrile to give m/z 339. Investigations using nuclear magnetic resonance (NMR) spectroscopy showed that there is a methylene group somewhere within the CAP molecule but not attached to any of the carbon atoms when the CAP is dissolved in methanol or acetonitrile before infusion into the mass spectrometer. The possible locations of attachment were speculated to be the electronegative atoms apart from the chlorine atoms due to valence considerations. The methylene group is attached to the nitrogen atom and forms a bond as observed in the MS/MS spectra of m/z 297, m/z 311, m/z 325 and m/z 339 which give m/z 183 as the base peak in all cases. Further experiments showed that there is cleavage of the methylated CAP molecule followed by cluster ion formation involving addition of methylene groups to the CAP fragment with m/z 183 to produce ions of m/z including m/z 297, m/z 311, m/z 325 and m/z 339. This process occurs in the mass spectrometer in the region housing the tube lens and is triggered when the ions are accelerated through this region by application of a negative tube lens offset voltage. This region affords collision of the charged droplets with a collision gas in this case nitrogen to strip the droplets of their solvent molecules. Experiments to follow the intensities of m/z 183, m/z 311, m/z 321, m/z 323, m/z 325 and m/z 339 as the tube lens offset voltage was varied were done in which the intensities of m/z 311, m/z 325 and m/z 339 were observed to be at their peak when the tube lens offset voltage was set at -40 V. When the tube lens offset voltage is swung to +40 V, thus decelerating the ions through the capillary skimmer region via the tube lens, the traditionally observed spectra with m/z 321, m/z 323 and m/z 325 were observed.