Distribution of N-glycosylation sequons in proteins: how apart are they?

N-glycosylation is a common protein modification process, which affects a number of properties of proteins. Little is known about the distribution of N-glycosylation sequons, for example, the distance between glycosylated sites and their position in the protein primary sequence. Using a large set of experimentally confirmed eukaryotic N-glycoproteins we analyzed the relative position and distribution of sequons. N-Glycosylation probability was found to be lower in the termini of protein sequences compared to the mid region. N-glycosylated sequons were found much farther from C terminus compared to the N-terminus of the protein sequence and this effect was more pronounced for NXS sequons. The distribution of sequons, modeled based on balls-in-boxes classical occupancy, showed a near-maximum probability. Considerable proportion of sequons was found within a distance of ten amino acids, indicating that the steric hindrance was not a key factor in protein N-glycosylation. Interestingly, the distribution of all sequons present in N-glycoproteins showed a pattern very similar to that of glycosylated sequons. The results indicate that protein N-glycosylation chiefly follows a random design.     

Pd-N to Pd-O rearrangement for a carbamate synthesis from carbon dioxide and methane: a density functional and ab initio molecular dynamics metadynamics study

We investigated the key step of Pd-N to Pd-O rearrangement from a model catalytic cycle for the activation of carbon dioxide and methane with static quantum chemical calculations and metadynamics simulation. Our calculations show that different bottlenecks appear in the catalytic cycle but that the investigated rearrangement of the Pd-N to Pd-O bounded complex has a barrier ΔG(#)/ΔF(#) of approximately 20 kJ mol?1 and is therefore accessible at ambient reaction conditions.     

Facile synthesis of polyacrylate directed silver nanoparticles for pH sensing through naked eye

Poly(acrylic acid) (PAA) and its salt poly(acrylate) (PA) have been synthesized through modified free radical polymerization in environmentally begin aqueous medium under ultrasound to make the process robust. The synthesized polymer is well-characterized through conventional techniques. Its salt is employed to produce highly stable and stimuli sensitive colloidal silver (Ag-PA sol) without using any additional reducing chemical reagents like sodium borohydride, ascorbic acid, hydrazine, etc or UV/Gamma radiation. A detailed mechanistic path of the polymerization and reduction of Ag⁺ on polyacrylate chains has been evaluated. Finally Ag-PA sol is used for pH sensing through naked eye to eliminate the need for sophisticated instrument for data collection. The present work focuses mainly the development of a low cost pH sensing system based on colorimetric ‘smart polymer’ having high practical utility. The unique structural and photo-physical features of nano-scaled materials open new opportunities for the applications of colorimetric pH sensor. In the present work, Ag nano-clusters capped by PA^? are employed as an effective colorimetric pH sensor for the first time, requiring no further functionalization.     

Chemical Degradation of Mercury Alkyls Mediated by Copper Selenide Nanosheets

Methylation and demethylation of mercury compounds are two important competing processes that control the net production of highly toxic mercury alkyls, methylmercury (MeHg⁺) and dimethylmercury (Me₂Hg), in environment. Although the microbial and the photochemical methylation and demethylation processes are well studied in recent years but the chemical methylation and demethylation processes have not been studied well. Herein, we report for the first time that the CuSe nanosheet has remarkable ability to activate the highly inert Hg?C bonds of various MeHg⁺ and Me₂Hg compounds at room temperature (21 °C). It facilitates the conversion of MeHg⁺ into Me₂Hg in the absence of any proton donors. Whereas, in the presence of any proton source, it has unique ability to degrade MeHg⁺ into CH₄ and inorganic mercury (Hg²⁺). Detailed studies revealed that the relatively fast Hg?C bond cleavage was observed in case of MeHgSPh or MeHgI in comparison to MeHgCl, indicating that the Hg?C bond in MeHgCl is relatively inert in nature. On the other hand, the Hg?C bond in Me₂Hg is considered to be exceedingly inert and, thus, difficult to cleave at room temperature. However, CuSe nanosheets showed unique ability to degrade Me₂Hg into CH₄ and Hg²⁺, via the formation of MeHg⁺, under acidic conditions at room temperature. DFT calculations revealed that the Hg?C bond activation occurs through adsorption on the surface of (100)‐faceted CuSe nanosheets.     

Studies in metal-ammonia reduction—5 : Reduction and reductive methylation of some naphthoic acids

Birch reductio and reductive methylations of some substituted naphtholic acids have been examined. The factors influencing the mechanism of reduction process have been discussed. Some of the reduced naphthoic acids are useful synthons for synthesis.     

Modification of the structural and optical properties of tin oxide nanoparticles by Co doping and thermal annealing

Enhancement of the UV photoluminescence emission of sol–gel synthesized tin oxide nanoparticles is achieved by a combination of thermal annealing and Co doping. The UV as well as the defect-related visible photoluminescence are correlated to the structural characteristics and surface Sn(OH)₂ content. The nanoparticle structure, size, crystallinity, and Sn(OH)₂ content are monitored by a combination of X-ray diffraction, transmission electron microscopy, and Raman spectroscopy. In the undoped powders, a suitable annealing leads to a significant UV luminescence at around 365 nm. After doping with Co and annealing, the UV emission is further enhanced. The improvement in the UV emission intensity following annealing and Co doping of SnO₂ is demonstrated to be due to a reduction in the hydroxyl content. The defect-related broad visible photoluminescence (～400–650 nm) can be deconvoluted into three bands at around 440 nm (blue), 510 nm (green), and 600 nm (orange). The green emission is related to Sn(OH)₂ determined by Raman spectroscopy. The blue and orange emissions are attributed to oxygen vacancies.     

Growth dynamics of pulsed laser deposited indium oxide thin films: a substrate dependent study

Indium oxide films are deposited by pulsed laser deposition in the presence of oxygen atmosphere, on different substrates, namely GaAs, Si, quartz, and glass. The structural, morphological, and interface characteristics are studied. Cubic In₂O₃ phase is confirmed by high resolution X-ray diffraction measurements. While the films on Si, glass, and quartz substrates are polycrystalline, the films on GaAs exhibit a preferred orientation along (2 2 2) plane. The structure and crystalline nature of the films are also confirmed by Raman spectroscopy. Furthermore, Raman spectra show the appearance of gallium oxide modes arising due to Ga diffusion from the substrate. The morphology of the films deposited on different substrates is studied by atomic force microscopy and rms roughness values are obtained. A two-dimensional power spectral density analysis has been used to calculate the growth exponent (α). A value of α > 1 (α < 1) for films grown on GaAs/Si (quartz/glass) substrates suggests that the growth on crystalline substrates is governed by the linear diffusion model, whereas the growth on amorphous substrates follows the dynamic scaling behaviour. UV-visible study shows a high optical transmittance of >90% and a band gap value of 3.64 and 3.79 eV for the films deposited on quartz and glass substrates, respectively.     

Gadolinium Break,Tetrad and Double-double Effects were here,What next??

It has been found that the properties of the lanthanide and actinide ions and their complexes vary linearly with the L-values (the total angular momentum). Usually plots resembling a four segmented «inclined W» are obtained for the whole series, where the data are available. Although some deviation from a symmetrically «inclined W» plot occured in a few cases, the linearity is maintained within the four segments. It is suggested that in future, for correlating the properties of the lanthanide and actinide series, the L-values rather than the atomic number (Z) or number of the f-electrons, should be used.     

Paper chromatographic and paper elettrophoretic study of the solution chemistry of Tc-99m-methylendiphosphonate and of Tc-99m-dimercaptosuccinate for improving the tumour-affinity of Tc-99m during scintigraphic imaging of cancer

In order to find the conditions under which Tc-99m-methylenediphosphonate (Tc-99m-MDP) and Tc-99m(V)-dimercaptosuccinate (Tc-99m(V)-DMSA) may become tumour-seeking agents, leaving healthy organs free from the radionuclide uptake, the solution chemistry of these radiopharmaceuticals was studied by paper chromatography and paper electrophoresis in distilled water, in physiological saline, in NAHCO3, and ascorbic acid solutions. Both radiopharmaceuticals are anionic in the radiopharmaceutical solution but get easily hydrolysed to form cationic Tc-99m species which concentrates in healthy bone and in some bone metastases. Tc-99m (V)-DMSA being more stable remains long in the blood pool giving undesirable presence of the radionuclide in lung, heart and kidneys, in addition to its reduced uptake in bone metastases and in some primaries. We are trying to eliminate these drawbacks of healthy organ uptake of Tc-99-m(V)-DMSA not only to get a clean scintigraphic image of the tumour with this radiopharmaceutical but to extend its formulation, thus obtained, to prepare radiopharmaceutical with Re-188, which is the higher homologue of Tc-99m, for systemic therapy of cancer. Essentially similar solution chemistry of both radiopharmaceuticals suggests that like Tc-99m-MDP, technetium-99m-dimercaptosuccinate is also a complex of tetravalent Tc-99m and not of pentavalent Tc-99m as so far supposed to be.     

New entry into beta-lactams via reaction of dimethoxycarbene with isocyanates

[reaction: see text] Highly substituted beta-lactams have been isolated as the major product of the reaction of dimethoxycarbene with selected isocyanates. This reaction offers the potential for rapid access into a variety of highly functionalized species.