排序方式: 共有42条查询结果,搜索用时 15 毫秒
1.
2.
3.
4.
Kristina Hetherington Dr. Zsofia Hegedus Dr. Thomas A. Edwards Dr. Richard B. Sessions Prof. Adam Nelson Prof. Andrew J. Wilson 《Chemistry (Weinheim an der Bergstrasse, Germany)》2020,26(34):7638-7646
Protein–protein interactions (PPIs) control virtually all cellular processes and have thus emerged as potential targets for development of molecular therapeutics. Peptide-based inhibitors of PPIs are attractive given that they offer recognition potency and selectivity features that are ideal for function, yet, they do not predominantly populate the bioactive conformation, frequently suffer from poor cellular uptake and are easily degraded, for example, by proteases. The constraint of peptides in a bioactive conformation has emerged as a promising strategy to mitigate against these liabilities. In this work, using peptides derived from hypoxia-inducible factor 1 (HIF-1α) together with dibromomaleimide stapling, we identify constrained peptide inhibitors of the HIF-1α/p300 interaction that are more potent than their unconstrained sequences. Contrary to expectation, the increased potency does not correlate with an increased population of an α-helical conformation in the unbound state as demonstrated by experimental circular dichroism analysis. Rather, the ability of the peptide to adopt a bioactive α-helical conformation in the p300 bound state is better supported in the constrained variant as demonstrated by molecular dynamics simulations and circular dichroism difference spectra. 相似文献
5.
Bereman MS Tomazela DM Heins HS Simonato M Cogo PE Hamvas A Patterson BW Cole FS MacCoss MJ 《Analytical and bioanalytical chemistry》2012,403(8):2397-2402
We report a method to measure in vivo turnover of four proteins from sequential tracheal aspirates obtained from human newborn infants with respiratory distress syndrome using targeted proteomics. We detected enrichment for all targeted proteins approximately 3 h from the start of infusion of [5,5,5-(2)H(3)] leucine, secretion times that varied from 1.2 to 2.5 h, and half lives that ranged between 10 and 21 h. Complement factor B, a component of the alternative pathway of complement activation, had an approximately twofold-longer half-life than the other three proteins. In addition, the kinetics of mature and carboxy-terminal tryptic peptides from the same protein (surfactant protein B) were not statistically different (p = 0.49). 相似文献
6.
7.
Spencer J Read J Sessions RB Howell S Blackburn GM Gamblin SJ 《Journal of the American Chemical Society》2005,127(41):14439-14444
Metallo-beta-lactamases are zinc-dependent enzymes responsible for resistance to beta-lactam antibiotics in a variety of host bacteria, usually Gram-negative species that act as opportunist pathogens. They hydrolyze all classes of beta-lactam antibiotics, including carbapenems, and escape the action of available beta-lactamase inhibitors. Efforts to develop effective inhibitors have been hampered by the lack of structural information regarding how these enzymes recognize and turn over beta-lactam substrates. We report here the crystal structure of the Stenotrophomonas maltophilia L1 enzyme in complex with the hydrolysis product of the 7alpha-methoxyoxacephem, moxalactam. The on-enzyme complex is a 3'-exo-methylene species generated by elimination of the 1-methyltetrazolyl-5-thiolate anion from the 3'-methyl group. Moxalactam binding to L1 involves direct interaction of the two active site zinc ions with the beta-lactam amide and C4 carboxylate, groups that are common to all beta-lactam substrates. The 7beta-[(4-hydroxyphenyl)malonyl]-amino substituent makes limited hydrophobic and hydrogen bonding contacts with the active site groove. The mode of binding provides strong evidence that a water molecule situated between the two metal ions is the most likely nucleophile in the hydrolytic reaction. These data suggest a reaction mechanism for metallo-beta-lactamases in which both metal ions contribute to catalysis by activating the bridging water/hydroxide nucleophile, polarizing the substrate amide bond for attack and stabilizing anionic nitrogen intermediates. The structure illustrates how a binuclear zinc site confers upon metallo-beta-lactamases the ability both to recognize and efficiently hydrolyze a wide variety of beta-lactam substrates. 相似文献
8.
Classical free-energy methods depend on the definition of physical or nonphysical integration paths to calculate free-energy differences between states. This procedure can be problematic and computationally expensive when the states of interest do not overlap and are far apart in phase space. Here we introduce a novel method to calculate free-energy differences that is path-independent by transforming each end state into a reference state in which the vibrational entropy is the sole component of the total entropy, thus allowing direct computation of the relative free energy. We apply the method to calculate side-chain entropies of a beta-hairpin-forming peptide in a variety of backbone conformations, demonstrating its importance in determining structural propensities. We find that low-free-energy conformations achieve their stability through optimal trade off between enthalpic gains due to favorable interatomic interactions and entropic losses incurred by the same. 相似文献
9.
Ming Ding Oliver FenwickFrancesco Di Stasio Jun-Yu OuNeil Sessions Yongmin JungFranco Cacialli Gilberto Brambilla 《Optics Communications》2012,285(23):4688-4697
Nanostructured optical microfiber tips are proposed and experimentally demonstrated to efficiently confine light beyond the diffraction limit at high powers. Focused ion beam milling was used for the nanostructuring of gold-coated optical microfiber tips with both single-ramp and wedge geometries. Small apertures were formed by flat cutting or hole drilling and optical spot sizes of ∼λ/10 with high transmission efficiency were achieved. Numerical simulations were carried out to optimize the device design with circularly polarized light. Enhanced transmission efficiencies (higher than 10−2) were recorded by optimizing the overall light throughput along the fiber tips. The tip thermal behavior was investigated by launching high powers into the device and recording the tip position in a scanning near-field optical microscopy set-up. This nanostructured optical microfiber tip has the potential for applications in optical recording, scanning near-field optical microscopy and lithography. 相似文献
10.
Bernard Dietrich Mir Wais Hosseini Jean-Marie Lehn Richard B. Sessions 《Helvetica chimica acta》1983,66(4):1262-1278
Three macrocyclic polyamines [24]ane-N6 1 , [32]ane-N8 2 and [27]ane-N6O3 3 of ring size 24, 32 and 27, respectively, have been synthesized. They contain either trimethylenediamine of ethylenediamine units. The acyclic analog 4 , as the reference compound, was also prepared. Compounds 1–3 are macrocyclic analogs of natural polyamines and are potential ligands for metal cations as well as, when protonated, for anions. The protonation constants of compounds 1–4 have been determined. They are high enough for compounds 1–4 to be fully protonated in a pH-range close to neutrality, as required for binding of anions of weak acids. The effect of structural features on the protonation constants are briefly discussed in relation to the design of macrocyclic polyamine ligands. 相似文献