Site-to-site peptide transport on a molecular platform using a small-molecule robotic arm

Peptides attached to a cysteine hydrazide ‘transporter module’ are transported selectively in either direction between two chemically similar sites on a molecular platform, enabled by the discovery of new operating methods for a molecular transporter that functions through ratcheting. Substrate repositioning is achieved using a small-molecule robotic arm controlled by a protonation-mediated rotary switch and attachment/release dynamic covalent chemistry. A polar solvent mixtures were found to favour Z to E isomerization of the doubly-protonated switch, transporting cargo in one direction (arbitrarily defined as ‘forward’) in up to 85% yield, while polar solvent mixtures were unexpectedly found to favour E to Z isomerization enabling transport in the reverse (‘backward’) direction in >98% yield. Transport of the substrates proceeded in a matter of hours (compared to 6 days even for simple cargoes with the original system) without the peptides at any time dissociating from the machine nor exchanging with others in the bulk. Under the new operating conditions, key intermediates of the switch are sufficiently stabilized within the macrocycle formed between switch, arm, substrate and platform that they can be identified and structurally characterized by ¹H NMR. The size of the peptide cargo has no significant effect on the rate or efficiency of transport in either direction. The new operating conditions allow detailed physical organic chemistry of the ratcheted transport mechanism to be uncovered, improve efficiency, and enable the transport of more complex cargoes than was previously possible.

Peptides are transported in either direction between chemically similar sites on a molecular platform, substrate repositioning is achieved using a cysteine hydrazide transporter module and a small-molecule robotic arm controlled by a rotary switch.     

Shift to Pseudomonic acid B production in P. fluorescens NCIMB10586 by mutation of mupirocin tailoring genes mupO, mupU, mupV, and macpE

Mupirocin, a polyketide-derived antibiotic from Pseudomonas fluorescens NCIMB10586, is a mixture of pseudomonic acids (PA) that target isoleucyl-tRNA synthase. The mup gene cluster encodes both type I polyketide synthases and monofunctional enzymes that should play a role during the conversion of the product of the polyketide synthase into the active antibiotic (tailoring). By in-frame deletion analysis of selected tailoring open-reading frames we show that mupQ, mupS, mupT, and mupW are essential for mupirocin production, whereas mupO, mupU, mupV, and macpE are essential for production of PA-A but not PA-B. Therefore, PA-B is not simply produced by hydroxylation of PA-A but is either a precursor of PA-A or a shunt product. In the mupW mutant, a new metabolite lacking the tetrahydropyran ring is produced, implicating mupW in oxidation of the 16-methyl group.     

Effect of an admixture on the electrical and thermal properties of triglycine sulphate crystals

The influence of chloroacetic acid amide (AC) on the temperature-dependence of the electrical conductivity (), thermal expansion (_ij) and specific heat ((C _p) of triglycine sulphate crystals was studied in the phase transition range (T _c=49°). The addition of isostructural AC increased the electrical conductivity, decreased the thermal expansion and changed theC _p peak. The mechanism is discussed on a thermodynamic basis.

---

Zusammenfassung Der Einfluß der Zumischung von Chloressigsäureamid (AC) auf die Temperaturabhängigkeit der elektrischen Leitfähigkeit, der Wärmeausdehnung _ij und der spezifischen WärmeC _p von Triglycinsulfat-Kristallen wurde im Phasenübergangsgebiet (T _c=49 °C) untersucht. Die Beimischung von isostrukturellem AC erhöht die elektrische Leitfähigkeit und vermindert die Wärmeleitfähigkeit, während derC _p-Peak verändert wird. Der Mechanismus kann thermodynamisch diskutiert werden.

---

(), () _ij) () , T _c=49°. , , , , C _p. .

     

Swarm intelligence-based hyper-heuristic for the vehicle routing problem with prioritized customers

The vehicle routing problem (VRP) is a combinatorial optimization management problem that seeks the optimal set of routes traversed by a vehicle to deliver products to customers. A recognized problem in this domain is to serve ‘prioritized’ customers in the shortest possible time where customers with known demands are supplied by one or several depots. This problem is known as the Vehicle Routing with Prioritized Customers (VRPC). The purpose of this work is to present and compare two artificial intelligence-based novel methods that minimize the traveling distance of vehicles when moving cargo to prioritized customers. Various studies have been conducted regarding this topic; nevertheless, up to now, few studies used the Cuckoo Search-based hyper-heuristic. This paper modifies a classical mathematical model that represents the VRPC, implements and tests an evolutionary Cuckoo Search-based hyper-heuristic, and then compares the results with those of our proposed modified version of the Clarke Wright (CW) algorithm. In this modified version, the CW algorithm serves all customers per their preassigned priorities while covering the needed working hours. The results indicate that the solution selected by the Cuckoo Search-based hyper-heuristic outperformed the modified Clarke Wright algorithm while taking into consideration the customers’ priority and demands and the vehicle capacity.

     

Ketalizations of aryl ω-(2-imidazolyl)alkyl ketones by glycerol and 3-mercapto-1,2-propanediol. synthesis and characterization of cis- and trans-{2-aryl-2-[ω-(2-imidazolyl)alkyl](1,3-dioxolan-4-yl and 1,3-oxathiolan-5-yl)}methanols

Aryl 2-[(2-imidazolyl)ethyl or 3-(2-imidazolyl)propyl]ketones were ketalized by glycerol or 3-mercapto-1,2-propanediol in boiling benzene in the presence of 4-toluenesulfonic acid to provide the title compounds. The aryl substituents are 4-chloro-, 4-bromo-, 4-fluoro-, or 2,4-dichlorophenyl. While aryl (2-imidazolyl)methyl ketones condensed with glycerol to form cis- and trans-{2-aryl-2-[(2-imidazolyl)methyl]-4-(hydroxymethyl)}-1,3-dioxolanes, related condensations with 3-mercapto-1,2-propanediol, under similar, or even more stringent reaction conditions, produced no 1,3-oxathiolane analogs, with the starting ketones being recovered. Separation and structure determination of these racemic cis and trans isomeric products are described. The structure of these stereoisomers was established by means of ¹H and ¹³C nmr correlation and nOe experiments. Selective methylation of the N-unsubstituted 2-imidazolyl alcohols with one equivalent sodium hydride and methyl iodide provided the corresponding N-methyl alcohols in excellent yields. With excess benzoyl chloride, N-unsubstituted 2-imidazolyl alcohols were initially converted to O, N-dibenzoates from which the N-benzoyl group was easily cleaved by ammonium hydroxide in ethanol to provide benzoate esters.     

Recent Updates on the Functional Impact of Kahweol and Cafestol on Cancer

Kahweol and cafestol are two diterpenes extracted from Coffea arabica beans that have distinct biological activities. Recent research describes their potential activities, which include anti-inflammatory, anti-diabetic, and anti-cancer properties, among others. The two diterpenes have been shown to have anticancer effects in various in vitro and in vivo cancer models. This review aims to shed light on the recent developments regarding the potential effects of kahweol and cafestol on various cancers. A systematic literature search through Google Scholar and PubMed was performed between February and May 2022 to collect updates about the potential effects of cafestol and kahweol on different cancers in in vitro and in vivo models. The search terms “Kahweol and Cancer” and “Cafestol and Cancer” were used in this literature review as keywords; the findings demonstrated that kahweol and cafestol exhibit diverse effects on different cancers in in vitro and in vivo models, showing pro-apoptotic, cytotoxic, anti-proliferative, and anti-migratory properties. In conclusion, the diterpenes kahweol and cafestol display significant anticancer effects, while remarkably unaffecting normal cells. Our results show that both kahweol and cafestol exert their actions on various cancers via inducing apoptosis and inhibiting cell growth. Additionally, kahweol acts by inhibiting cell migration.     

Synthesis and Characterization of Carbohydrate-Copolyhydrazides Containing Ether Bonds in the Monomer Unit

Abstract

A series of carbohydrate-containing copolyhyrazides having ether bonds were prepared by low temperature solution polycondensation. 2,3,4,5-tetra-O-acetyl galactaroyl dichloride was polycondensed with hydroquinone-1,4-diacetic acid dihydrazide (1), 2-bromo-,2-chloro, 2-nirohydroquinone-1,4-diacetic acid dihydrazide (2, 3 and 4, respectively) and isophthaloyl dihydrazide (5) in dimethylformamide and produced copolyhydrazides (6-10), respectively. Copoly {1-[2-(2,3,4,5-tetra-O-acetyl-galacto-tetritoldi-1,4-yl)-5-(1,3,4-oxadiazol-di-2,5-yl]-3-[2-(1,3,4-oxadiazole-di-2,5-yl)-benzene]}(11)wassynthesizedbydehydrative cyclisation of the polymer(10) using thionyl chloride. Also, polymer (10), under de-O-acetylation in methanolic ammonia, gave the de-O-acetylated polymer (12). All the present new polymers were characterized by elemental analysis and i.r. and ¹H-NMR spectroscopy. Their solubility, viscosity and physical properties are studied.     

Kinetic spectrophotometric methods for the determination of alfuzosin hydrochloride in bulk and pharmaceutical formulations

Simple and sensitive kinetic spectrophotometric methods were established for the determination of alfuzosin hydrochloride in bulk and in its pharmaceutical preparations using alkaline potassium permanganate as an oxidizing agent. The methods involve determination of alfuzosin HCl by kinetic studies of its oxidation at room temperature for a fixed time of 15 min. The absorbance of the colored manganate ions was measured at 610 nm. Alternatively, the decrease in the absorbance of permanganate upon addition of the studied drug was also measured at 525 nm. The absorbance-concentration plots in both procedures were rectilinear over the range of 2.0–30.0 μg/mL. The different experimental parameters affecting the development were carefully studied and optimized. The determination of alfuzosin HCl by the fixed concentration and initial rate methods is also feasible with the calibration equations obtained but the fixed time method has been found to be more applicable. Both procedures were applied to the determination of alfuzosin HCl in formulations. The results obtained were in good agreement with those obtained using reference methods.     

Phenylpropanoids from Tanacetum baltistanicum with Nematocidal and Insecticidal Activities

Chemistry of Natural Compounds - One new and seven known secondary metabolites 1–8 were isolated, and the nematocidal and insecticidal activities of major compounds from Tanacetum...     

Deciphering the Role of Filamin B Calponin-Homology Domain in Causing the Larsen Syndrome,Boomerang Dysplasia,and Atelosteogenesis Type I Spectrum Disorders via a Computational Approach

Filamins (FLN) are a family of actin-binding proteins involved in regulating the cytoskeleton and signaling phenomenon by developing a network with F-actin and FLN-binding partners. The FLN family comprises three conserved isoforms in mammals: FLNA, FLNB, and FLNC. FLNB is a multidomain monomer protein with domains containing an actin-binding N-terminal domain (ABD 1–242), encompassing two calponin-homology domains (assigned CH1 and CH2). Primary variants in FLNB mostly occur in the domain (CH2) and surrounding the hinge-1 region. The four autosomal dominant disorders that are associated with FLNB variants are Larsen syndrome, atelosteogenesis type I (AOI), atelosteogenesis type III (AOIII), and boomerang dysplasia (BD). Despite the intense clustering of FLNB variants contributing to the LS-AO-BD disorders, the genotype-phenotype correlation is still enigmatic. In silico prediction tools and molecular dynamics simulation (MDS) approaches have offered the potential for variant classification and pathogenicity predictions. We retrieved 285 FLNB missense variants from the UniProt, ClinVar, and HGMD databases in the current study. Of these, five and 39 variants were located in the CH1 and CH2 domains, respectively. These variants were subjected to various pathogenicity and stability prediction tools, evolutionary and conservation analyses, and biophysical and physicochemical properties analyses. Molecular dynamics simulation (MDS) was performed on the three candidate variants in the CH2 domain (W148R, F161C, and L171R) that were predicted to be the most pathogenic. The MDS analysis results showed that these three variants are highly compact compared to the native protein, suggesting that they could affect the protein on the structural and functional levels. The computational approach demonstrates the differences between the FLNB mutants and the wild type in a structural and functional context. Our findings expand our knowledge on the genotype-phenotype correlation in FLNB-related LS-AO-BD disorders on the molecular level, which may pave the way for optimizing drug therapy by integrating precision medicine.