An unusual dimer of camptothecin-7-aldehyde

An intermolecular aldol reaction of 20S-camptothecin-7-aldehyde in the presence of strong bases affords an unusual dimeric compound, the structure and stereochemistry of which was assigned on the basis of NMR analysis and MM2 calculations.     

Primate beta-defensins--structure, function and evolution

Host defense peptides (HDPs) are endogenous antibiotics that play a multifunctional role in the innate immunity of mammals. Among these, beta-defensins contribute to mucosal and epithelial defense, also acting as signal molecules for cellular components of innate and adaptive immunity. Numerous members of this family have been identified in mammalian and avian species, and genomic studies in human and mouse indicate a considerable complexity in their gene organization. Recent reports on the evolution of primate and rodent members of this family indicate quite a complex pattern of variation. In this review we briefly discuss the evolution of mammalian beta-defensins in relation to other types of defensins, and then concentrate on the evolution of beta-defensins 1 to 4 in primates. In particular, the surprisingly varied patterns of evolution, which range from neutral or weakly purifying, to positive selection to a high level of conservation are analyzed in terms of possible genetics, structural or functional implications, as well as to observed variations on the antimicrobial activity in vitro. The role of polymorphisms in the genes encoding for these host defense peptides in determining susceptibility to human diseases are also briefly considered.     

Intramolecular dissociative electron transfer

Dissociative electron transfers (ET) are reactions in which the ET is associated with the cleavage of a sigma bond. Although a rather satisfactory amount of information is currently available on the intermolecular and heterogeneous dissociative ET reactions, less is known for the corresponding intramolecular processes, despite the relevance of these reactions in both chemistry and biochemistry. This tutorial review focuses on the most recent developments in this area, with particular emphasis on the reactions occurring in well-defined Donor-Spacer-Acceptor molecular systems. The goal is to provide the reader with the essential background to understand and possibly predict the feasibility and rates of these reactions, as well as to stimulate the application of the intramolecular dissociative ET concepts and related issues to still unexplored molecular systems.     

The Greatest Lower Bound of a Boros–Moll Sequence

Mathematical Notes - The Boros–Moll polynomials $$P_m(a)$$ arise in the evaluation of a quartic integral. In the past few years, there has been some remarkable research on the properties of...     

Solid-phase microextraction gas chromatography/mass spectrometry: a new method for species identification of truffles

This study describes a rapid method to identify different truffle species by analysis of their volatile compound fraction using static headspace solid-phase microextraction gas chromatography/mass spectrometry. The volatile organic compounds (VOCs) were extracted using a new 2-cm 50/30 microm DVB/CAR/PDMS fiber placed for 10 min in the headspace of the truffle sample with the vial maintained at 20 degrees C (in a thermostatically controlled analysis room). The mass spectra of the VOC chromatograms were represented as 'fingerprints' of the analysed samples. Next, stepwise factorial discriminant analysis afforded a limited number of characteristic fragment ions that allowed a classification of the truffle species studied. This new method provides an effective approach to rapid quality control and identification of truffle species by analysis of their volatile fraction. Moreover, this method offers the advantage of minimizing thermal, mechanical, and chemical modifications of the truffles, thereby reducing the risk of analytical artifacts.     

Electrophilic cyclization of o-acetoxy- and o-benzyloxyalkynylpyridines: an easy entry into 2,3-disubstituted furopyridines

[reaction: see text] 2,3-Disubstituted furo[3,2-b]pyridines, 2,3-disubstituted furo[2,3-b]pyridines, and 2,3-disubstituted furo[2,3-c]pyridines are readily prepared under mild conditions via the palladium-catalyzed cross-coupling of 1-alkynes with o-iodoacetoxy- or o-iodobenzyloxypyridines, followed by electrophilic cyclization by I(2) or by PdCl(2) under a balloon of carbon monoxide.     

Expedient parallel synthesis of 2-amino-4-heteroarylpyrimidines

[reaction: see text] An expedient synthesis of diverse 2-amino-4-heteroarylpyrimidines via a 2-chloropyrimidine intermediate is described. A series of potentially biologically active analogues have been synthesized in two parallel steps to afford focused arrays.     

Thermal analysis of dithiomalonamide complexes

Dithiomalonamide [H₂A, CH₂(CSNH₂)₂] and 2,2-dimethyldithiomalonamide [H₂B, C(CH₃)₂(CSNH₂)₂] can act as bidentate ligands and form stable, cationic 1∶2 complexes with general formula M₂(H₂L)₂X₂ [M=Ni²⁺, Pd²⁺, Pt²⁺;X=C1, Br, I; H₂L=H₂A, H₂B] in strong acidic medium. An elaborate thermal study is presented, based on results from elemental analyses and vibrational studies (IR and Raman spectroscopy). The H₂A complexes start to decompose by releasing two HX molecules whereafter a stable intermediate M(HA)₂ is formed. The H₂B complexes degrade in a different way; the metal-sulphur bond is broken and the ligand is expelled as a whole. Influences of the metal ion and of the halogenide counterions are investigated.     

Sedimentary process inferences from Humic substances analysis and deposition rates (Western Ross Sea,Antarctica)

The first 40?cm of sediment of three basins in the Ross Sea were sampled using a box corer. Site Y1 was located close to the coast in Terra Nova Bay; the sediment of site Y3 was collected in a more distal basin in the central sector of the Ross Sea; finally site Y5 was sampled in the deepest zone of the Joides Basin.

Sediment cores were sliced and analysed with a depth resolution of 2–4.5?cm. The distribution of humic substances and their structural features along the cores were determined and related to the pattern of Total Organic Carbon (TOC) and sedimentological data. The grain size distribution and the ²¹⁰Pb inventories allow the sediment of the study sites to be characterised.

The humic substance content in the sediment decreases, with a change in slope between 23 and 26?cm at Y1, between 12 and 15?cm at Y3 and constant values with further depth. At Y5 the depth profile of humic substance content shows constant values in the upper 17?cm and values decrease with further depth. The pattern of humic substance yield is similar to that found for TOC. The analysis of the elemental composition of the humic acids extracted from different sediment depths shows an increasing C/N atomic ratio at sites Y1 and Y3 and constant values along the Y5 core. The depth profile of the C/N atomic ratio is confirmed by the changes observed in the structural characterisation and indicates a shift from the freshly deposited organic matter on the sediment surface to more humified material (humin). The results obtained highlight a different sedimentation rate at the three sites as deduced from sedimentological analysis.     

ToF-SIMS measurements with topographic information in combined images

In 2D and 3D time-of-flight secondary ion mass spectrometric (ToF-SIMS) analysis, accentuated structures on the sample surface induce distorted element distributions in the measurement. The origin of this effect is the 45° incidence angle of the analysis beam, recording planar images with distortion of the sample surface. For the generation of correct element distributions, these artifacts associated with the sample surface need to be eliminated by measuring the sample surface topography and applying suitable algorithms. For this purpose, the next generation of ToF-SIMS instruments will feature a scanning probe microscope directly implemented in the sample chamber which allows the performance of topography measurements in situ. This work presents the combination of 2D and 3D ToF-SIMS analysis with topographic measurements by ex situ techniques such as atomic force microscopy (AFM), confocal microscopy (CM), and digital holographic microscopy (DHM). The concept of the combination of topographic and ToF-SIMS measurements in a single representation was applied to organic and inorganic samples featuring surface structures in the nanometer and micrometer ranges. The correct representation of planar and distorted ToF-SIMS images was achieved by the combination of topographic data with images of 2D as well as 3D ToF-SIMS measurements, using either AFM, CM, or DHM for the recording of topographic data.