Assessment of some iterative methods for non-symmetric linear systems arising in computational fluid dynamics

Various tests have been carried out in order to compare the performances of several methods used to solve the non-symmetric linear systems of equations arising from implicit discretizations of CFD problems, namely the scalar advection-diffusion equation and the compressible Euler equations. The iterative schemes under consideration belong to three families of algorithms: relaxation (Jacobi and Gauss-Seidel), gradient and Newton methods. Two gradient methods have been selected: a Krylov subspace iteration method (GMRES) and a non-symmetric extension of the conjugate gradient method (CGS). Finally, a quasi-Newton method has also been considered (Broyden). The aim of this paper is to provide indications of which appears to be the most adequate method according to the particular circumstances as well as to discuss the implementation aspects of each scheme.     

Reductive monoalkylation of aromatic and aliphatic nitro compounds and the corresponding amines with nitriles

[reaction: see text] A simple, selective, rapid, and efficient procedure for the synthesis of secondary amines from the reductive alkylation of either aliphatic or aromatic nitro compounds and the corresponding amines is reported. Ammonium formate is used as the hydrogen source and Pd/C as the hydrogen transfer catalyst. The reaction is carried out at room temperature. The rate differences for the preferential formation of secondary over tertiary products are due to both steric and electronic factors.     

Tying together the ultrastructural modifications of wood fibre induced by pulping processes with the mechanical properties of paper

The composition and ultrastructural arrangement of cell wall polymers in wood fibres have determining influence on the properties of wood derived materials. It is therefore important to improve our understanding of the relationship between fibres organisation, the modifications induced by pulping treatments, and the resulting paper sheet mechanical properties. The different treatments to which fibres are subjected during the manufacturing of pulps and papers induce morphological and micro-structural alterations due to the removal of wall constituents and of microfibrillar elements. The impact of pulping processes on fibres was investigated at the ultrastructural scale of transmission electron microscopy. Particular attention was given to the effects of beating in refiners at various intensities on the ultrastructure of fibres. The most characteristic effects consisted of delaminations, microfibril disorganisation, and even fractures, of varying importance depending on the intensity of the mechanical refining. The consequences of internal alterations and surface modifications of the fibres were examined in relation to the paper sheet mechanical properties. Correlations between the type of alteration observed in the fibres and its possible impact on a given paper mechanical property are suggested. With similar approaches, the effects of drying and recycling were studied.     

Tetrahedral onsager crosses for solubility improvement and crystallization bypass

Pure organic molecules exhibiting a suitable concave rigid shape are expected to give porous glasses in the solid state. Such a feature opens new opportunities to avoid crystallization and to improve molecular solubility in relation to the high internal energy of these solid phases. To quantitatively explore the latter strategy, a series of rigid tetrahedral conjugated molecules nC and the corresponding models nR have been synthesized. Related to the present purpose, several properties have been investigated using UV absorption, steady-state fluorescence emission, differential scanning calorimetry, (1)H NMR translational self-diffusion, magic angle spinning (13)C NMR, and multiple-beam interferometry experiments. The present tetrahedral crosses are up to 8 orders of magnitude more soluble than the corresponding model compounds after normalization to the same molecular length. In addition, they give concentrated monomeric solutions that can be used to cover surfaces with homogeneous films whose thickness goes down to the nanometer range. Such attractive features make cross-like molecular architectures promising for many applications.     

Application of Chitosan-Based Biomaterials for Blood Vessel Regeneration

Summary: Vascular diseases are the leading cause of morbidity and mortality in the western world. Autologous vessels remain the standard for coronary grafting and peripheral bypass surgery; however, their availability in patients can be limited. Therapeutic angiogenesis using growth factors, genes, or progenitor cells has been given considerable scientific attention over the last decade, but has not yet provided a definitive clinical benefit. Biomaterials could be developed to protect protein, DNA and cells against hostile conditions. Chitosan, a natural polymer of glucosamine and N-acetyl glucosamine, has been widely studied in tissue engineering due to its biocompatibility, biodegradability, and muco-adhesive and antimicrobial properties. Notably, the application of chitosan has been gaining attention in the vascular field due to its structural similarity to glycosaminoglycans, which are components of a tissue's extracellular matrix. In this review, chitosan-based materials, and their use in tissue engineered blood vessels, and as protein, gene and cell vectors for angiogenic therapy are discussed.     

An Integrated Mass Spectrometry-Based Glycomics-Driven Glycoproteomics Analytical Platform to Functionally Characterize Glycosylation Inhibitors

Cancer progression is linked to aberrant protein glycosylation due to the overexpression of several glycosylation enzymes. These enzymes are underexploited as potential anticancer drug targets and the development of rapid-screening methods and identification of glycosylation inhibitors are highly sought. An integrated bioinformatics and mass spectrometry-based glycomics-driven glycoproteomics analysis pipeline was performed to identify an N-glycan inhibitor against lung cancer cells. Combined network pharmacology and in silico screening approaches were used to identify a potential inhibitor, pictilisib, against several glycosylation-related proteins, such as Alpha1-6FucT, GlcNAcT-V, and Alpha2,6-ST-I. A glycomics assay of lung cancer cells treated with pictilisib showed a significant reduction in the fucosylation and sialylation of N-glycans, with an increase in high mannose-type glycans. Proteomics analysis and in vitro assays also showed significant upregulation of the proteins involved in apoptosis and cell adhesion, and the downregulation of proteins involved in cell cycle regulation, mRNA processing, and protein translation. Site-specific glycoproteomics analysis further showed that glycoproteins with reduced fucosylation and sialylation were involved in apoptosis, cell adhesion, DNA damage repair, and chemical response processes. To determine how the alterations in N-glycosylation impact glycoprotein dynamics, modeling of changes in glycan interactions of the ITGA5–ITGB1 (Integrin alpha 5-Integrin beta-1) complex revealed specific glycosites at the interface of these proteins that, when highly fucosylated and sialylated, such as in untreated A549 cells, form greater hydrogen bonding interactions compared to the high mannose-types in pictilisib-treated A549 cells. This study highlights the use of mass spectrometry to identify a potential glycosylation inhibitor and assessment of its impact on cell surface glycoprotein abundance and protein–protein interaction.