Increased sensitivity for Coomassie staining of sodium dodecyl sulfate-polyacrylamide gels using PhastSystem Development Unit

Staining of proteins in PhastGel gradient media with Coomassie Blue R 350 was considerably improved using a lower concentration of methanol (10% v/v) and 2% ammonium sulfate in the staining solution and 10% acetic acid for destaining. The detection limit in sodium dodecyl sulfate-polyacrylamide gels was lowered by a factor of 10 to about 2 ng per protein band. The Coomassie staining method was adapted to the newly developed silver staining procedure so that both can be used in parallel in PhastSystem.     

Reverse-phase high-performance liquid chromatography of virus proteins and other hydrophobic proteins

Summary So far most solvents generally used in reverse phase chromatography (RPC) for separation of peptides and water soluble polypeptides could not be utilized for hydrophobic proteins such as membrane proteins and structural polypeptides of viruses due to their insufficient solubility. But we have introduced a new RP-HPLC solvent system which was very useful in our studies on poliovirus polypeptides. Formic acid in high concentration is an extremely potent solvent for proteins, particularly those that are hydrophobic. Preliminary estimates are made of the concentration of formic acid which is required to completely dissolve hydrophobic proteins. For example, solubilization of structural polypeptides of poliovirus which are absolutely water insoluble requires 60% formic acid. Therefore, we used a proportion of 60% formic acid in all solvents for reversed phase chromatography and applied propanol-2 or acetonitrile as the organic modifiers for gradient elution. Using this mobile phase all four poliovirus polypeptides of three serological types were obtained in high purity by this rapid procedure. In each case, polypeptides were quantitatively eluted independent of the amount of protein (1–1000 μg) injected onto the columns. The solvents used were volatile and easily removed in a short evaporation step. Therefore this solvent system is suited for analytical and for micropreparative separation of proteins for chemical, biochemical and immunological studies. Rechromatography and electrophoresis in SDS-polyacrylamide gels of the separated polypeptides demonstrated that this solvent system with its high proportion of formic acid did not alter their primary structure. There may have been major changes in secondary and tertiary structure. In contrast, alterations of the elution characteristics were observed after reduction of disulfide bridges and several modifications of proteins. Presented at the 15th International Symposium on Chromatography, Nürnberg, October 1984     

Studies on the Glycosylation of N-Acetylneuraminic Acid

Abstract

Glycal derivatives of N-acetylneuraminic acid were prepared and their N-iodosuccinimide-mediated glycosylation shown to proceed only with most reactive alcohols, Their reduced enol ether reactivity is attributed to the α unsaturated ester reature. Thus several reduced glycal derivatives were synthesized. These couid be glycosyiatec with simple alcohols as well as otner saccnarides as aglycones in averaae to modest yields with the trans-diaxiai additions compounas prevailing. A number or selective and specific prepparation led to both the anomeric phenylthioglycosides or N dcety Ineuraminic acid. These could be used in phenylmercurl triflate-promoted glycosylations to afford several derivatives.     

Native horizontal ultrathin polyacrylamide gel electrophoresis of proteins under basic and acidic conditions.

The preparation of homogeneous ultrathin native polyacrylamide gels, using a basic as well as an acidic buffer system is described. The basic buffer system consists of Tris-HC1/Tris-glycine, the same buffer as in sodium dodecyl sulfate (SDS)-gel electrophoresis but without SDS. The acidic system uses potassium acetate, pH 4.3, as gel buffer and beta-alanine, pH 4.6, acetic acid as electrolytes. The gels are covalently bound on glass plates. Binding of acidic gels requires a special pretreatment of glass plates. The whole procedure is simple and extraordinarily fast: 100-120 min from the start of gel preparation to the end of electrophoresis. Coomassie staining is done in 40 min and silver staining in 90 min. The native gels are excellently suited for diffusion blotting. Further attractive properties of these gels are easy handling, simple drying and dimensional stability.     

Improved silver staining procedure for fast staining in PhastSystem Development Unit. I. Staining of sodium dodecyl sulfate gels

A new modification of silver staining of proteins in sodium dodecyl sulfate polyacrylamide gels is adapted to automated staining in PhastSystem Development Unit. The use of a reduction step, after fixation, with thiosulfate in alcoholic sodium acetate buffer results in a considerable increase in sensitivity without the need for a recycling step. The detection limit is tenfold lower than in the silver staining procedure recommended so far for PhastSystem and corresponds to 0.05-0.1 ng protein per band. Total staining time with the new procedure is 75 min.     

High-sensitivity miniaturized immunoassays for tumor necrosis factor alpha using microfluidic systems

We use microfluidic chips to detect the biologically important cytokine tumor necrosis factor alpha (TNF- alpha) with picomolar sensitivity using sub-microliter volumes of samples and reagents. The chips comprise a number of independent capillary systems (CSs), each of which is composed of a filling port, an appended microchannel, and a capillary pump. Each CS fills spontaneously by capillary forces and includes a self-regulating mechanism that prevents adventitious drainage of the microchannels. Thus, interactive control of the flow in each CS is easily achieved via collective control of the evaporation in all CSs by means of two Peltier elements that can independently heat and cool. Long incubation times are crucial for high sensitivity assays and can be conveniently obtained by adjusting the evaporation rate to have low flow rates of approximately 30 nL min(-1). The assay is a sandwich fluorescence immunoassay and takes place on the surface of a poly(dimethylsiloxane)(PDMS) slab placed across the microchannels. We precoat PDMS with capture antibodies (Abs), localize the capture of analyte molecules using a chip, then bind the captured analyte molecules with fluorescently-tagged detection Abs using a second chip. The assay results in a mosaic of fluorescence signals on the PDMS surface which are measured using a fluorescence scanner. We show that PDMS is a compatible material for high sensitivity fluorescence assays, provided that detection antibodies with long excitation wavelength fluorophores ( > or =580 nm) are employed. The chip design, long incubation times, proper choice of fluorophores, and optimization of the detection Ab concentration all combine to achieve high-sensitivity assays. This is exemplified by an experiment with 170 assay sites, occupying an area of approximately 0.6 mm(2) on PDMS to detect TNF-alpha in 600 nL of a dendritic cell (DC) culture medium with a sensitivity of approximately 20 pg mL(-1)(1.14 pM).     

Preparative separation of poliovirus structural polypeptides by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, copper staining and electroelution, and induction of monospecific antisera

Viral polypeptides were prepared by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) followed by copper staining and electroelution from gel slices. Poliovirus capsid polypeptide VP 1 isolated by this procedure induced monospecific antibodies in rabbits, i.e., antisera reacting only with the homologous polypeptide. Our results demonstrate the applicability of the described copper staining method as a rapid visualization step for preparing viral proteins after SDS-PAGE.     

Trennungen hydrophober virusproteine

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