An activation mechanism for ATP cleavage in muscle.

Evidence for a proposed activation mechanism is summarized. The low rate of ATP cleavage in the resting state of muscle is considered to result from the formation of a stable ring structure involving the two essential sulfhydryl groups on each myosin head and MgATP. Activation is thought to occur by interaction of actin in the vicinity of one of the essential sulfhydryl groups. Thus opening the stable ring leading to rapid dissociation of split products. This idea is consistent with the kinetic scheme of ATP cleavage developed recently by other workers and allows a prediction of the shift in population of intermediate states with changes in solvent conditions. It is also supported by our recent studies on the spatial geometry of the ring. The possibility that other nucleophilic groups may replace the sulfhydryl groups in other contractile systems is considered. The relevance of the ring structure to the tension generating event is discussed on the basis of recent measurements of the rate of contraction of modified (SH1-blocked) actomyosin threads. Results indicate the ability to form the ring structure is an essential requirement of the contractile process in these systems, and, moreover, that single, modified heads of myosin can act independently to produce the same rate of contraction as native myosin. This latter finding suggests that the myosin duplex exhibits some type of negative cooperativity in the contractile process.     

The kinetics of free radicals generated by IR laser photolysis. II. Reactions of C2(X 1Σ+g), C2(a 3Πu), C3(X̄ 1Σ+g) and CN(X 2Σ+) with O2

The 300 K reactions of O₂ with C₂(X ¹Σ⁺_g), C₂(a ³ Π_u), C₃(X? ¹Σ⁺_g) and CN(X ²Σ⁺), which are generated via IR multiple photon dissociation (MPD), are reported. From the spectrally resolved chemiluminescence produced via the IR MPD of C₂H₃CN in the presence of O₂, CO molecules in the a ³Σ⁺, d ³Δ_i, and e ³Σ^? states were identified, as well as CH(A ²Δ) and CN(B ²Σ⁺) radicals. Observation of time resolved chemiluminescence reveals that the electronically excited CO molecules are formed via the single-step reactions C₂(X ¹Σ⁺_g, a ³Π_u) + O₂ → CO(X ¹Σ⁺ + CO(T), where T denotes are electronically excited triplet state of CO. The rate coefficients for the removal of C₂(X ¹Σ⁺_g) and C₂(a ³Π_u) by O₂ were determined both from laser induced fluorescence of C₂(X ¹Σ⁺_g) and C₂(a ³Π_u), and from the time resolved chemiluminescence from excited CO molecules, and are both (3.0 ± 0.2)10^?12 cm³ molec^?1 s^?1. The rate coefficient of the reaction of C₃ with O₂, which was determined using the IR MPD of allene as the source of C₃ molecules, is <2 × 10^?14 cm³ molec^?1 s^?1. In addition, we find that rate coefficients for C₃ reactions with N₂, NO, CH₄, and C₃H₆ are all < × 10^?14 cm³ molec^?1 s^?1. Excited CH molecules are produced in a reaction which proceeds with a rate coefficient of (2.6 ± 0.2)10^?11 cm³ molec^?1 s^?1. Possible reactions which may be the source of these radicals are discussed. The reaction of CN with O₂ produces NCO in vibrationally excited states. Radiative lifetime of the ā ²Σ state of NCo and the ā ¹Π_u(000) state of C₃ are reported.     

Trapping and release of CO2 guest molecules by amorphous ice

Interactions of 13CO2 guest molecules with vapor-deposited porous H2O ices have been examined using temperature-programmed desorption (TPD) and Fourier transform infrared (FTIR) techniques. Specifically, the trapping and release of 13CO2 by amorphous solid water (ASW) has been studied. The use of 13CO2 eliminates problems with background CO2. Samples were prepared by (i) depositing 13CO2 on top of ASW, (ii) depositing 13CO2 underneath ASW, and (iii) codepositing 13CO2 and H2O during ASW formation. Some of the deposited 13CO2 becomes trapped when the ice film is annealed. The amount of 13CO2 trapped in the film depends on the deposition method. The release of trapped molecules occurs in two stages. The majority of the trapped 13CO2 escapes during the ASW-to-cubic ice phase transition at 165 K, and the rest desorbs together with the cubic ice film at 185 K. We speculate that the presence of 13CO2 at temperatures up to 185 K is due to 13CO2 that is trapped in cavities within the ASW film. These cavities are similar to ones that trap the 13CO2 that is released during crystallization. The difference is that 13CO2 that remains at temperatures up to 185 K does not have access to escape pathways to the surface during crystallization.     

Theoretical and experimental investigations of the electronic Rydberg states of diazomethane: assignments and state interactions

The electronic states of diazomethane in the region 3.00-8.00 eV have been characterized by ab initio calculations, and electronic transitions in the region 6.32-7.30 eV have been examined experimentally using a combination of 2 + 1 REMPI spectroscopy and photoelectron imaging in a molecular beam. In the examined region, three Rydberg states of 3p character contribute to the transitions, 2(1)A2(3p(y) <-- pi), 2(1)B1(3p(z) <-- pi), and 3(1)A1(3p(x) <-- pi). The former two states are of mostly pure Rydberg character and exhibit a resolved K structure, whereas the 3(1)A1(3p(x) <-- pi) state is mixed with the valence 2(1)A1(pi* <-- pi) state, which is unbound and is strongly predissociative. Analyses of photoelectron kinetic energy distributions indicate that the ground vibrational level of the 2(1)B1(3p(z)) state is mixed with the 2(1)A2(3p(y)) nu(9) level, which is of B1 vibronic symmetry. The other 2(1)A2(3p(y)) vibronic states exhibit pure Rydberg character, generating ions in single vibrational levels. The photoelectron spectra of the 3(1)A1(3p(x) <-- pi) state, on the other hand, give rise to many states of the ion as a result of strong mixing with the valence state, as evidenced also in the ab initio calculations. The equilibrium geometries of the electronic states of neutral diazomethane were calculated by CCSD(T), using the cc-pVTZ basis, and by B3LYP, using the 6-311G(2df,p) basis. Geometry and frequencies of the ground state of the cation were calculated by CCSD(T)/cc-pVTZ, using the unrestricted (UHF) reference. Vertical excitation energies were calculated using EOM-CCSD/6-311(3+,+)G* at the B3LYP optimized geometry. The theoretical results show that the 2(1)A2(3p(y) <-- pi) and 2(1)B1(3p(z) <-- pi) states have geometries similar to the ion, which has C(2v) symmetry, with slight differences due to the interactions of the electron in the 3p orbital with the nuclei charge distributions. The geometry of the 3(1)A1(3p(x) <-- pi) state is quite different and has Cs symmetry. The experimental and theoretical results agree very well, both in regard to excitation energies and to vibrational modes of the ion.     

Overtone-induced dissociation and isomerization dynamics of the hydroxymethyl radical (CH2OH and CD2OH). I. A theoretical study

The dissociation of the hydroxymethyl radical, CH(2)OH, and its isotopolog, CD(2)OH, following the excitation of high OH stretch overtones is studied by quasi-classical molecular dynamics calculations using a global potential energy surface (PES) fitted to ab initio calculations. The PES includes CH(2)OH and CH(3)O minima, dissociation products, and all relevant barriers. Its analysis shows that the transition states for OH bond fission and isomerization are both very close in energy to the excited vibrational levels reached in recent experiments and involve significant geometry changes relative to the CH(2)OH equilibrium structure. The energies of key stationary points are refined using high-level electronic structure calculations. Vibrational energies and wavefunctions are computed by coupled anharmonic vibrational calculations. They show that high OH-stretch overtones are mixed with other modes. Consequently, trajectory calculations carried out at energies about ~3000 cm(-1) above the barriers reveal that despite initial excitation of the OH stretch, the direct OH bond fission is relatively slow (10 ps) and a considerable fraction of the radicals undergoes isomerization to the methoxy radical. The computed dissociation energies are: D(0)(CH(2)OH → CH(2)O + H) = 10,188 cm(-1), D(0)(CD(2)OH → CD(2)O + H) = 10,167 cm(-1), D(0)(CD(2)OH → CHDO + D) = 10,787 cm(-1). All are in excellent agreement with the experimental results. For CH(2)OH, the barriers for the direct OH bond fission and isomerization are: 14,205 and 13,839 cm(-1), respectively.     

Overtone-induced dissociation and isomerization dynamics of the hydroxymethyl radical (CH2OH and CD2OH). II. Velocity map imaging studies

The dissociation of the hydroxymethyl radical, CH(2)OH, and its isotopolog, CD(2)OH, following excitation in the 4ν(1) region (OH stretch overtone, near 13,600 cm(-1)) was studied using sliced velocity map imaging. A new vibrational band near 13,660 cm(-1) arising from interaction with the antisymmetric CH stretch was discovered for CH(2)OH. In CD(2)OH dissociation, D atom products (correlated with CHDO) were detected, providing the first experimental evidence of isomerization in the CH(2)OH ? CH(3)O (CD(2)OH ? CHD(2)O) system. Analysis of the H (D) fragment kinetic energy distributions shows that the rovibrational state distributions in the formaldehyde cofragments are different for the OH bond fission and isomerization pathways. Isomerization is responsible for 10%-30% of dissociation events in all studied cases, and its contribution depends on the excited vibrational level of the radical. Accurate dissociation energies were determined: D(0)(CH(2)OH → CH(2)O + H) = 10,160 ± 70 cm(-1), D(0)(CD(2)OH → CD(2)O + H) = 10,135 ± 70 cm(-1), D(0)(CD(2)OH → CHDO + D) = 10,760 ± 60 cm(-1).     

Two-photon dissociation of the NO dimer in the region 7.1-8.2 eV: excited states and photodissociation pathways

A study of excited states of the NO dimer is carried out at 7.1-8.2 eV excitation energies. Photoexcitation is achieved by two-photon absorption at 300-345 nm followed by (NO)(2) dissociation and detection of electronically excited products, mostly in n=3 Rydberg states of NO. Photoelectron imaging is used as a tool to identify product electronic states by using non-state-selective ionization. Photofragment ion imaging is used to characterize product translational energy and angular distributions. Evidence for production of NO(A (2)Sigma(+)), NO(C (2)Pi), and NO(D (2)Sigma(+)) Rydberg states of NO, as well as the valence NO(B (2)Pi) state, is obtained. On the basis of product translational energy and angular distributions, it is possible to characterize the excited state(s) accessed in this region, which must possess a significant Rydberg character.     

Photodissociation dynamics of the NO dimer. I. Theoretical overview of the ultraviolet singlet excited states

Molecular orbital theory and calculations are used to describe the ultraviolet singlet excited states of NO dimer. Qualitatively, we derive and catalog the dimer states by correlating them with monomer states, and provide illustrative complete active space self-consistent field calculations. Quantitatively, we provide computational estimates of vertical transition energies and absorption intensities with multireference configuration interaction and equations-of-motion coupled-cluster methods, and examine an important avoided crossing between a Rydberg and a valence state along the intermonomer and intramonomer stretching coordinates. The calculations are challenging, due to the high density of electronic states of various types (valence and Rydberg, excimer and charge transfer) in the 6-8 eV region, and the multiconfigurational nature of the ground state. We have identified a bright charge-transfer (charge-resonance) state as responsible for the broadband seen in UV absorption experiments. We also use our results to facilitate the interpretation of UV photodissociation experiments, including the time-resolved 6 eV photodissociation experiments to be presented in the next two papers of this series.     

Spectroscopy and energy distribution study of the Cl + HI chemical laser

The spectral distribution of the pulsed, flash initiated Cl + HI → HCl(ν) + I chemical laser (3.6μ–4.0μ) was studied in both free running and grating selected systems. New transitions in both cavities are reported. The relative populations of the lasing HCl vibrational levels were measured using the grating selection technique. The relative distributions were found to be N₃/N₂ = 1.10 to 1.29 and N₂/N₁ = 2.23 to 2.32. A computational comparison between the chemical laser results and previous measurements by the infrared chemiluminescence method is made in view of vibrational V—R,T,V′ relaxation processes which may change the nascent population distribution.     

Allosteric Regulation of Enzymatic Reactions in a Transparent Inorganic Sol-Gel Material

Glutamate dehydrogenase is encapsulated in a transparent porous silicate matrix by using sol-gel techniques. The inorganic polymer is formed around the enzyme (MW > 300,000 D). The enzyme is active in the material, catalyzes the reaction of L-glutamate to 2-oxoglutarate and follows Michaelis-Menten kinetics. The allosteric regulators ADP and GTP inhibit or activate the reaction; at pH 6, GTP acts as a strong activator and ADP acts as an inhibitor. This system involves a complex series of interactions; the co-enzyme NAD⁺ is required for catalysis, large-scale conformational changes accompany the binding of the substrate and coenzyme to the enzyme, the activators/inhibitors must bind to the enzyme to regulate the reactions, and the substrates and products must diffuse through the matrix to and from the binding site. The influence of the unique matrix on the complex enzymatic system is discussed.