Disentangling of Information About the Structure of Biomolecules Based on the Decomposition and Separation of Two-Dimentional Charge Distributions of Ions

Electrospray ionization mass spectra of biomolecules typically consist of a series of multiply charged ions because of the transfer of protons or other charge carriers between ions of biomolecules and the surrounding liquid or gas. The distribution of intensities of ions retained charge carriers contains information about the spatial structure of biomolecules. A new method is developed for the separation and decomposition of multidimensional charge distributions of ions bearing other charge carriers, such as alkali metal ions, along with protons. The proposed method ensures the estimation of the probability of charge carrier retention by separate functional groups for the selected conformations of biomolecules. The paper describes the application of this method to the analysis of a two-dimensional charge distribution of horse heart cytochrome C, resulting in the revelation of at least two its structural forms under the studied conditions.     

Possibilities for Energy Transport into a Radio-Frequency Quadrupole by a Shifted Supersonic Gas Jet. Part II. Accumulation and Heating of Ions

The aim of this work was the assessment of the ability of a supersonic jet to accumulate sufficiently dense ion clouds inside the quadrupole, the ion cloud being “heated” to a relatively high temperature under a relatively low density of the residual gas (pressure lower than 10^–4 Torr). Kinetic measurements gave an estimate of the number of accumulated ions at the beginning of the quadrupole of about 2 × 10⁷ and their internal temperature of 6000 K.     

A new approach to data reduction and evaluation in high-resolution time-of-flight mass spectrometry using a time-to-digital convertor data-recording system

A new effective and robust approach to the detection of incompletely resolved peaks, and evaluation of their parameters in high-resolution time-of-flight mass spectra for time-to-digital convertor (TDC) data acquisition mode, is described. The method is based on fast construction of a smoothed continuous curve that approximates the initial data (transformed to a constant relative width of time intervals for ion counting) with respect to precision of measurements. The first derivative of this curve is used for correction of skewness of the peak shape as far as possible. A contribution of the second derivative is subtracted from the smoothed curve for better resolution of partially resolved peaks. The comparison of local maxima of this resulting final curve with those for the initial smoothed curve allows reliable detection of the peaks and to test whether or not they are spoiled by overlapping. Ion counting performed by TDC gives an opportunity to estimate standard deviations of peak locations and their intensities. These values proved to be close to theoretically minimal standard deviations for these parameters for single fully resolved peaks. Thus, estimates of the main parameters of mass peaks by the described method are close to statistically efficient estimators for these parameters.     

Use of decomposition of ion charge-state distributions for the interpretation of electrospray ionization mass spectra of bioorganic compound

The application of our method of the decomposition of mass spectral peak series due to independent unique modifications at a number of molecular sites to the analysis of electrospray ionization mass spectra containing multiply charged ions peaks of biopolymer solutions is considered. The capabilities and limitations of this approach are discussed. Data on the results mass spectrum decomposition of the chicken eggs lysozyme and pepsin at different acquisition conditions are presented. Based on these data, at least partial unfolding of the initially native lisozyme biomolecule in solution in the electrospray ion source can be supposed. The presence of pepsin positive ions with the number of charges significantly exceeding five basic amino acid residues can be explained by the localization of two positive solvent ions close to some initially negatively charged groups of acidic amino acid residues in the ion source.     

Possibilities for Energy Pumping in a Radio-Frequency Quadrupole by Shifted Supersonic Gas Jet. Part I: Accelerated and Excited Atom Transmission

Generation of an ion beam and its transmission into a mass analyzer is one of central problems in mass spectrometry. The use of a narrowly directed supersonic gas jet has a number of advantages in comparison with other sampling methods. The aim of this work was to confirm the declared earlier properties of the jet formed at the outlet of a cylindrical channel when the free path length of gaseous atoms at the beginning of the channel is comparable with the channel diameter. The paper describes the ability of such a supersonic jet to conserve an additional energy of jet gas atoms. A significant influence of the temperature of the gas flow on the yield of cyclohexane fragment ions was found, cyclohexane being an admixture in the noble gas jet passing through an electron ionization ion source. A possibility of obtaining a flow of metastable electronically excited atoms inside the jet is also shown. The results of the work confirm the availability of the supersonic gas jet for the design of a high efficiency ion source inside the radio-frequency quadrupole at the input of the mass analyzer.