Functionalized Silver-Ion-Mediated α-dC/β-dC Hybrid Base Pairs with Exceptional Stability: α-d-5-Iodo-2′-Deoxycytidine and Its Octadiynyl Derivative in Metal DNA

Silver-mediated α-dC–Ag⁺–β-dC hybrid base pairs decorated with 5-iodo- or 5-octadiynyl residues are well accommodated in duplex DNA. A strong T_m increase and favorable thermodynamic data for duplex DNA were observed after addition of silver ions. The phenomenon is particularly obvious when both nucleobases of the base pairs are functionalized. Neither the position of the base pair, nor the type of 5-substituent had a negative influence. On the contrary, functionalization of conventional silver-mediated β-dC–Ag⁺–β-dC homo base pairs showed a negative impact induced by the bulky substituents. To this end, cytosine modified 12-mer oligodeoxynucleotides were prepared by solid-phase synthesis employing new α-anomeric 2′-deoxycytidine phosphoramidites. A multigram scale synthesis was developed for 5-iodo-α-d -2′-deoxycytidine ( 1 ) employing the direct glycosylation of cytosine with Hoffer's α-d -halogenose followed by separation of anomeric DMT nucleosides. Regarding base-pair stability and functionalization silver-mediated α/β-dC hybrid base pairs were found to be superior to β/β-dC homo pairs. According to their extraordinary properties, they might find applications in DNA diagnostics, material science, or nanotechnology.     

Adsorption of the Cu<Superscript>2+</Superscript> ions from aqueous solutions on the active carbon oxidized with hydrogen peroxide and impregnated with nitrogen-containing compounds

Adsorption of the copper ions from aqueous solutions, benzene, and water on the active carbon obtained by chemical activation from walnut shells was studied. The active carbon was additionally oxidized with hydrogen peroxide and then impregnated with nitrogen-containing compounds. As a result of impregnation with melamine, a secondary porosity is formed within the oxidized active carbon, leading to an increase in the specific surface of the sorbent. A modified carbon surface is heterogeneous, and the carbons themselves exhibit catalytic activity in the oxidation of luminol and decomposition of hydrogen peroxide.     

Thermal behaviour of polyacrylamidoxime-copper chelates

The purpose of this work was to investigate the effect of several factors (anion type in the copper salt, pH and concentration of the salt solution) on the structure and thermo-oxidative degradation of the polyacrylamidoxime-copper chelates, by using elemental analysis, IR spectroscopy and dynamic thermogravimetry. The chelates containing copper ions as sulphate exhibit a better initial thermal stability than the polyacrylamidoxime fibre presumably due to the crosslinking generated by the intermolecular complexation of the ions; the removal of the sulphate anions takes place concomitantly with the second step of polymeric chain decomposition. The initial thermal decomposition of the chelates formed by copper ions as nitrate begins at lower temperatures as compared to the polyacrylamidoxime fibre, probably by the nitrate anion release, which partly overlaps the initial decomposition of the copper ion-crosslinked polymeric chains. Copper ions as either sulphate or nitrate catalyse the reactions involved in the main step of polyacrylamidoxime fibre decomposition; the higher the copper amount, the stronger the catalytic effect.     

On the efficiency of exchange in parallel tempering monte carlo simulations

We introduce the concept of effective fraction, defined as the expected probability that a configuration from the lowest index replica successfully reaches the highest index replica during a replica exchange Monte Carlo simulation. We then argue that the effective fraction represents an adequate measure of the quality of the sampling technique, as far as swapping is concerned. Under the hypothesis that the correlation between successive exchanges is negligible, we propose a technique for the computation of the effective fraction, a technique that relies solely on the values of the acceptance probabilities obtained at the end of the simulation. The effective fraction is then utilized for the study of the efficiency of a popular swapping scheme in the context of parallel tempering in the canonical ensemble. For large dimensional oscillators, we show that the swapping probability that minimizes the computational effort is 38.74%. By studying the parallel tempering swapping efficiency for a 13-atom Lennard-Jones cluster, we argue that the value of 38.74% remains roughly the optimal probability for most systems with continuous distributions that are likely to be encountered in practice.     

Exploring the Effect of Ligand Structural Isomerism in Langmuir–Blodgett Films of Chiral Luminescent EuIII Self‐Assemblies

Here we have investigated the influence of the antenna group position on both the formation of chiral amphiphilic Eu^III‐based self‐assemblies in CH₃CN solution and, on the ability to form monolayers on the surface of quartz substrates using the Langmuir–Blodgett technique, by changing from the 1‐naphthyl ( 2(R) , 2(S) ) to the 2‐naphthyl ( 1(R) , 1(S) ) position. The evaluation of binding constants of the self‐ assemblies in CH₃CN solution was achieved using conventional techniques such as UV/Visible and luminescence spectroscopies along with more specific circular dichroism (CD) spectroscopy. The binding constants obtained for EuL , EuL₂ and EuL₃ species in the case of 2‐naphthyl derivatives were comparable to those obtained for 1‐naphthyl derivatives. The analysis of the changes in the CD spectra of 1(R) and 1(S) upon addition of Eu^III not only allowed us to evaluate the values of the binding constants but the resulting recalculated spectra may also be used as fingerprints for assignment of the chiral self‐assembly species formed in solution. The obtained monolayers were predominantly formed from EuL₃ (≈85 %) with the minor species present in ≈15 % EuL₂ .     

Investigation of the cellulose ethers effect on the Portland cement hydration by thermal analysis

Cellulose ethers (CE) are introduced in almost all cement-based dry mortars in order to retain water in mortar mass avoiding losing it too quickly by substrate absorption or water evaporation. In this way the workability of the fresh material, the adherence to the substrate and internal-strength characteristics of mortar, render or tile adhesive are improved. One of the side effects of cellulose ethers is the Portland cement hydration delaying. The influence of six commercial cellulose ethers, hydroxyethylmethyl cellulose (HEMC) type, on the hydration of Portland cement CEM I 42.5 R, was followed by thermal analysis (TG and DTA curves). Three of these cellulose ethers are unmodified, and have different viscosities, while three of them have the same viscosity but differ in the degree of modification (unmodified, one with medium modification and one with high modification). The interest of dry mortars producers for the effects of these cellulose ethers, is generated by the wide offer available on the market and by the absence of systematic data on the effect of different viscosities and degrees of modification on dry mortars properties. In order to quantify the effect of the CE on the cement hydration, the surface area of the endothermic effect corresponding to the dehydration of portlandite (Ca(OH)₂), formed after 1, 3, and 7 days of hydration, was defined. It was noted that the proportion of Ca(OH)₂ in samples containing CE after 1 day was 30–40 % lower than in reference sample. After 3 and 7 days of hydration the proportion of Ca(OH)₂ in samples containing CE approaches that of reference sample (10–20 % less). For the same period of hydration, the different viscosity, and different degree of modification of cellulose ethers cause variations in narrow limits of the proportion of Ca(OH)₂, and the degree of cement hydration, respectively.     

State of uranyl silicates MII(HSiUO6)2 ·6H2O (MII=Mn, Co, Ni, Cu, Zn) in aqueous solutions

Uranyl silicates with formula M^II(HSiUO₆)₂·6H₂O (M^II=Mn, Co, Ni, Cu, Zn) were investigated in aqueous solutions in the pH range of 0÷14. The pH interval was established where compounds preserve their composition and structure. It varies in the pH range of (3.5–4.0)÷(10.8–11.4) and depends on M^II type. Out of this pH interval investigated uranyl silicates convert to the compounds of other composition and structure, such as amorphous silica, polyuranates and hydroxides of 3d-transition elements. The solubility of M^II(HSiUO₆)₂·6H₂O was determined, it’s value changes on the several orders of magnitude from 10^?6 M in subalkali solutions to 10^?3 M in acid and strongly alkaline media. Using obtained experimental data the solubility products and solubility curves of uranyl silicates were calculated by mathematical modeling. Also the speciation diagrams of uranium (VI), silicon (IV) and M (II) in solutions and solids were plotted.     

About collapse and revivals of two quantum oscillators in off-resonance interaction

The off-resonance effect and its influence on the reversibility between two quantum subsystems in interaction (single mode cavity field and a three-level atom in cascade configuration) are studied. The partial restoration condition is found at which these radiators can restore their diagonal moments, while the non-diagonal ones remain correlated after the interaction process.     

3D MR microscopy with resolution 3.7 microm by 3.3 microm by 3.3 microm

The technique of magnetic resonance imaging microscopy holds promise of bringing the full capabilities of NMR to arbitrarily specified positions within spatially inhomogeneous systems, including biological cells, yet the possibilities are limited by the need for adequate sensitivity and spatial resolution. We report proton magnetic resonance images obtained by combining advances in receiver coil sensitivity, gradient strength, and pulse/gradient sequence design. We achieve resolution of 3.7 +/- 0.4 microm by 3.3 +/- 0.3 microm by 3.3 +/- 0.3 microm for a volume resolution approximately 40 femtoliters (corresponding to approximately 3 x 10(12) proton spins).