The back photoreaction of the M intermediate in the photocycle of bacteriorhodopsin: mechanism and evidence for two M species

The back photoreaction of the M intermediate in the photocycle of bacteriorhodopsin is investigated both for the native pigment and its D96N mutant. The experimental setup is based on creating the M intermediate by a first pulse, followed by a (blue) laser pulse which drives the back photoreaction of M. Experiments are carried out varying the delay between the two pulses, as well as the temperature over the -25 degrees C-20 degrees C range. It is found that the kinetic patterns of the M back photoreaction change with time after the generation of this intermediate. The data provide independent evidence for the suggestion of a photocycle mechanism based on two distinct M intermediates. They are thus in keeping with the consecutive model of Varo and Lanyi (Biochemistry 30, 5016-5022; 1991), although they cannot exclude other models such as those based on branched or parallel cycles. More generally, we offer a "photochemical" approach to discriminating between intermediate stages in the photocycle which does not depend on spectroscopic and/or kinetic data. While markedly affecting the rate of the M --> N transition in the photocycle, the rate of the thermal step in back photoreaction of M, at both room and low temperatures, is not significantly affected by the D96N mutation. It is proposed that while Asp 96 is the Schiff-base protonating moiety in the M --> N transition, another residue (most probably Asp 85) reprotonates the Schiff base following light absorption by M.     

ON THE ROLE OF TYROSINE IN THE PHOTOCYCLE OF BACTERIORHODOPSIN

Abstract -The rate of formation of the M intermediate ( k _M) in the photocycles of bacteriorhodopsin (bR₅₇₀) and of nitrated bacteriorhodopsin (bR₅₃₂ⁿ), is measured over the range between pH 6.5 and 11.5. In the case of bR₅₇₀, k _M is markedly pH dependent, exhibiting a titration-like curve with pK ∽ 10.3. The pH dependency is completely eliminated by nitration. On the basis of previous work by Lemke and Oesterhelt (1981), the effect is attributed to the specific modification of the Tyr 26 residue. The data are rationalized by a mechanism in which deprotonation of Tyr 26 at the stage of the L intermediate constitutes a prerequisite for deprotonation of the retinal-lysine SchifT base. Both reactions are intimately associated with the photo-induced proton pump mechanism.     

Multiple fluorescences. Different triplets from N-methyl-2-N-phenylamino-6-naphthalenesulfonate and its C-protonated form by laser pulse photolysis

The triplets generated by laser pulse excitation of N-methyl-2-N-phenylamino-6-naphthalenesulfonate (1M) and its C-protonated form, the N-methyl betaine of 6-sulfonato-3β-tetralenone N-phenylimine (2M) are distinct and apparently do not interconvert at 25°C either in dioxane-water or in glycerol, for which single pulses must be used to avoid conversion of 1M to 2M. Some parallel results are reported for the N-hydroxyethyl derivatives (1HEand2HE).     

PHOTOCHEMICAL STUDIES OF ARTIFICIAL BACTERIORHODOPSINS

Abstract— Three artificial bacteriorhodopsins are prepared [from synthetic aromatic and bicyclic analogues of retinal and exposed to spectroscopic and pulsed lader photolysis studies. The spectra of the pigments, all perturbed in the ring region of the molecule, are markedly blue shifted in respect to natural bacteriorhodopsin. The shift is attributed to a decreased effect of a protein charge in the vicinity of the ring, in agreement with the point-charge model of Nakanishi et al. , 1980. The photocycles of the synthetic pigments exhibit a primary red-shifted (K) intermediate and a blue shifted (M) transient, analogous to those observed for the natural pigment. Such observations impose considerable limitations, both on the possible chromophore conformational changes and on the effects of neighbouring protein charges associated with the photocycle.
It is concluded that only the Schiff base counter-ion, but not the ring charge, may be associated with the generation of the primary red shifted K species. Moreover, the rigidity imposed on the polyene by the additional ring in the bicyclic analogue shows that the photocycle can not be initiated by conformational changes in the retinyl moiety up to the C₉ carbon in the polyene chain. It is also observed that the K→L process in the photocycle is considerably slower in the case of the synthetic pigments. The observation is rationalized by attributing the process to a conformational change in the polyene moiety catalyzed by the ring protein charge.     

Following evolution of bacteriorhodopsin in its reactive excited state via stimulated emission pumping

New information concerning the photochemical dynamics of bacteriorhodopsin (BR) is obtained by impulsively stimulating emission from the reactive fluorescent state. Depletion of the excited-state fluorescence leads to an equal reduction in production of later photoproducts. Accordingly, chromophores which are forced back to the ground state via emission do not continue on in the photocycle, conclusively demonstrating that the fluorescent state is a photocycle intermediate. The insensitivity of depletion dynamics to the "dump" pulse timing, throughout the fluorescent states lifetime, and the biological inactivity of the dumped population suggest that the fluorescent-state structure is constant, well-defined, and significantly different than that where crossing to the ground state takes place naturally. In conjunction with conclusions from comparing the photophysics of BR with those of synthetic analogues containing "locked" retinals, present results show that large-amplitude torsion around C13=C14 is required to go between the above structures.     

Photoreduction of bacteriorhodopsin Schiff base at low humidity. A study with C13=C14 nonisomerizable artificial pigments

The retinal protonated Schiff base of bacteriorhodopsin is photoreactive to reducing agents such as NaBH4. In the present work we have studied the effect of different protein hydration levels on the photoreductive reaction, as well as the consequences of preventing isomerization around the critical C13=C14 retinal double bond. It was revealed that the rate of light-induced NaBH4 reaction can be fitted to three phases, between 100 and 87%, from 87 to 35% and below 35% relative humidities (r.h.). The three phases are attributed to three protein regions characterized by different water affinities. Furthermore, it is shown that the PSB reduction reaction is light catalyzed even in artificial pigments derived from retinal analogs, in which isomerization around the C13=C14 double bond is prevented. It is suggested that the protein experiences light-induced conformational alterations that are not associated with C13=C14 double bond isomerization. In the 13-cis locked pigment the rate of reduction reaction is affected by r.h. levels only below 35%. The relatively low r.h. required for withdrawing water from the protein is attributed to the increased protein-water affinity in this specific pigment.     

ANALYSIS OF PRIMARY PHOTOCHEMICAL PROCESSES IN BACTERIORHODOPSIN

Abstract— The sequence of primary events following light absorption by light adapted bacteriorhodopsin (bR₅₇₀) is considered by analyzing recent picosecond absorption and emission data. The analysis is facilitated by theoretical calculations which allow us to characterize the properties of the first excited singlet state. It is concluded that excitation leads to the eventual population of a photochemically important nonfluorescent excited state (I) which decays into a photoproduct (J₆₂₅)- In J₆₂₅, which is most probably a ground state molecule, the chromophore has undergone a structural change, presumably trans → 13- cis isomerization. It is suggested that the subsequent process

reflects a relaxation of the protein environment involving proton transfer.     

THE RADIOLYTIC REDUCTION OF THE SCHIFF BASE IN BACTERIORHODOPSIN

Abstract —Nanosecond electron beam pulses cause radiolytic reduction of the retinal Schiff base in bacteriorhodopsin. The effects of different scavengers show that both H atoms and the formate radical anion can act as the reducing species. Model system studies on the radiolysis of retinal indicate transient formation of a retinal radical anion and suggest an analogous two-step reaction in bR. Delocalization of the radical in the polyene system and reaction with surrounding groups would account for the relatively low yield of reduced Schiff base and the appearance of intra- and intermolecular crosslinks in irradiated bacteriorhodopsin.