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1.
Alan Rigter Jan PM Langeveld Drophatie Timmers-Parohi Jorg G Jacobs Peter LJM Moonen Alex Bossers 《BMC biochemistry》2007,8(1):6
Background
The common event in transmissible spongiform encephalopathies (TSEs) or prion diseases is the conversion of host-encoded protease sensitive cellular prion protein (PrPC) into strain dependent isoforms of scrapie associated protease resistant isoform (PrPSc) of prion protein (PrP). These processes are determined by similarities as well as strain dependent variations in the PrP structure. Selective self-interaction between PrP molecules is the most probable basis for initiation of these processes, potentially influenced by chaperone molecules, however the mechanisms behind these processes are far from understood. We previously determined that polymorphisms do not affect initial PrPC to PrPSc binding but rather modulate a subsequent step in the conversion process. Determining possible sites of self-interaction could elucidate which amino acid(s) or amino acid sequences contribute to binding and further conversion into other isoforms. To this end, ovine – and bovine PrP peptide-arrays consisting of 15-mer overlapping peptides were probed with recombinant sheep PrPC fused to maltose binding protein (MBP-PrP). 相似文献2.
3.
Metal/superconductor/semiconductor (Ag/Hg-1212/CdSe) hetero-nanostructures have been fabricated using pulse-electrodeposition
technique and are characterized by X-ray diffraction (XRD), full-width at half-maximum (FWHM) and scanning electron microscopy
(SEM) studies. The junction capacitance of Ag/Hg-1212, Hg-1212/CdSe and Ag/Hg-1212/CdSe heterojunctions is measured in dark
and under laser irradiation at room temperature. The nature of the junction formed and built-in-junction potentials were determined.
The increase in carrier concentration across the junction due to photo-irradiation has been observed. 相似文献
4.
One of the innovative technological directions for the high-temperature superconductors has been persued by fabricating the
heteroepitaxial multilayer structures such as superconductor-semiconductor heterostructures. In the present investigation,
metal/superconductor/semiconductor (Ag/Tl-2223/CdSe) hetero-nanostructures have successfully been fabricated using dc electrodeposition
technique and were characterized by X-ray diffraction (XRD), full-width at half-maximum (FWHM) and scanning electron microscopy
(SEM) studies. The measurement of junction capacitance as a function of biasing voltage was used for the estimation of junction
built-in-potential (V
D) and to study the charge distribution in a heterojunction. The Mott-Schottky plots were measured for each junction in dark
and under the photo-irradiation. The effect of laser irradiation on C-V characteristics of hetero-nanostructure has been studied. 相似文献
5.
P.M. Oppeneer P.M. Panchmatia B. Sanyal O. Eriksson Md.E. Ali 《Progress in Surface Science》2009,84(1-2):18-29
We have investigated computationally the magnetic spin state of free metalloporphyrins and how magnetic ordering in metalloporphyrins can be induced through contact with the metallic surface and what the origin of the exchange interaction is. To this end, we performed density functional theory (DFT) and DFT + U studies for a series of isolated, ligated as well as unligated Fe-porphyrin (FeP) molecules as well as various FeP molecules on surfaces. Our calculations for isolated FePs clearly demonstrate that the usual DFT-based exchange-correlation functionals (such as the generalized gradient approximation) cannot predict the experimental high-spin ground state of these molecules. Instead, one has to resort to DFT + U calculations with a Coulomb U of about 4 eV on the Fe atoms, to obtain the correct single-molecule spin state. The magnetic interaction between FeP and a Co surface has been studied computationally with the DFT and DFT + U approaches. Our total energy DFT and DFT + U calculations predict an optimal Fe – substrate distance of 3.5 Å and a ferromagnetic exchange coupling of FeP to the substrate, in accordance with recent experiments. For Fe-porphyrin chloride (FePCl), on the other hand, an antiferromagnetic coupling is computed to be more favorable. Our study demonstrates that due to an indirect exchange interaction, which is mediated through the four nitrogen atoms, ferromagnetic ordering on the FeP is stabilized. 相似文献
6.
Despite the burgeoning interest in the various biological functions and consequent therapeutic potential of the vast number of oligosaccharides found in nature on glycoproteins and cell surfaces, the development of combinatorial carbohydrate chemistry has not progressed as rapidly as expected. The reason for this imbalance is rooted in the difficulty of oligosaccharide assembly and analysis that renders synthesis a rather cumbersome endeavor. Parallel approaches that generate series of analogous compounds rather than real libraries have therefore typically been used. Since generally low affinity is obtained for interactions between carbohydrate receptors and modified oligosaccharides designed as mimetics of natural carbohydrate ligands, glycopeptides have been explored as alternative mimics. Glycopeptides have been proven in many cases to be superior ligands with higher affinity for a receptor than the natural carbohydrate ligand. High-affinity glycopeptide ligands have been found for several types of receptors including the E-, P-, and L-selectins, toxins, glycohydrolases, bacterial adhesins, and the mannose-6-phosphate receptor. Furthermore, the assembly of glycopeptides is considerably more facile than that of oligosaccharides and the process can be adapted to combinatorial synthesis with either glycosylated amino acid building blocks or by direct glycosylation of peptide templates. The application of the split and combine approach using ladder synthesis has allowed the generation of very large numbers of compounds which could be analyzed and screened for binding of receptors on solid phase. This powerful technique can be used generally for the identification and analysis of the complex interaction between the carbohydrates and their receptors. 相似文献
7.
Proceeding from analytical expressions for two-center kernel functions that we derived recently, we present new analytical formulas for the two-center Coulomb and overlap integrals over Slater-type orbitals. These formulas are of an exceptionally simple analytical structure and high numerical efficiency. An especially important point is that for the most frequently needed ranges of discrete quantum numbers, the formulas are completely stable in the cases of nearly equal scaling parameters or vanishing interatomic distances, except for one particular case of the Coulomb integral. No special asymptotic formulas are needed any more to compute the two-center integrals over Slater-type orbitals in these case. Furthermore, a largely recursive formulation makes the integral evaluation very economical and fast. In particular, we assess the numerical performance of a new kind of angular momentum recurrences that we have proposed in a previous article [W. Hierse and P.M. Oppeneer, J. Chem. Phys. 99 , 1278 (1993)]. © 1994 John Wiley & Sons, Inc. 相似文献
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9.
Brena B Puglia C de Simone M Coreno M Tarafder K Feyer V Banerjee R Göthelid E Sanyal B Oppeneer PM Eriksson O 《The Journal of chemical physics》2011,134(7):074312
The electronic structure of iron phthalocyanine (FePc) in the valence region was examined within a joint theoretical-experimental collaboration. Particular emphasis was placed on the determination of the energy position of the Fe 3d levels in proximity of the highest occupied molecular orbital (HOMO). Photoelectron spectroscopy (PES) measurements were performed on FePc in gas phase at several photon energies in the interval between 21 and 150 eV. Significant variations of the relative intensities were observed, indicating a different elemental and atomic orbital composition of the highest lying spectral features. The electronic structure of a single FePc molecule was first computed by quantum chemical calculations by means of density functional theory (DFT). The hybrid Becke 3-parameter, Lee, Yang and Parr (B3LYP) functional and the semilocal 1996 functional of Perdew, Burke and Ernzerhof (PBE) of the generalized gradient approximation (GGA-)type, exchange-correlation functionals were used. The DFT/B3LYP calculations find that the HOMO is a doubly occupied π-type orbital formed by the carbon 2p electrons, and the HOMO-1 is a mixing of carbon 2p and iron 3d electrons. In contrast, the DFT/PBE calculations find an iron 3d contribution in the HOMO. The experimental photoelectron spectra of the valence band taken at different energies were simulated by means of the Gelius model, taking into account the atomic subshell photoionization cross sections. Moreover, calculations of the electronic structure of FePc using the GGA+U method were performed, where the strong correlations of the Fe 3d electronic states were incorporated through the Hubbard model. Through a comparison with our quantum chemical calculations we find that the best agreement with the experimental results is obtained for a U(eff) value of 5 eV. 相似文献
10.
The spin-flip (SF) Eliashberg function is calculated from first principles for ferromagnetic Ni to accurately establish the contribution of Elliott-Yafet electron-phonon SF scattering to Ni's femtosecond laser-driven demagnetization. This is used to compute the SF probability and demagnetization rate for laser-created thermalized as well as nonequilibrium electron distributions. Increased SF probabilities are found for thermalized electrons, but the induced demagnetization rate is extremely small. A larger demagnetization rate is obtained for nonequilibrium electron distributions, but its contribution is too small to account for femtosecond demagnetization. 相似文献