Three-center-two-electron and four-center-four-electron bonds. A study by electron charge density over the structure of methonium cations

We study the electronic density charge topology of CH(5)(+) species 1 (C(s)()), 2 (C(s)()), and 3 (C(2)(v)) at ab initio level using the theory of atoms in molecules developed by Bader. Despite the reports of previous studies concerning carbocationic species, the methane molecule is protonated at the carbon atom, which clearly shows its pentacoordination. In addition to the fact that hydrogen atoms in the methonium molecule behave in a very fluxional fashion and that the energy difference among the species 1, 2, and 3 are very low, is important to point out that two different topological situations can be defined on the basis of our study of the topology of the electronic charge density. Then, the species 1 and 2 present a three-center-two-electron (3c-2e) bond of singular characteristics as compared with other carbocationic species, but in the species 3, the absence of a 3c-2e bond is noteworthy. This structure can be characterized through the three bond critical points found, corresponding to saddle points on the path bonds between the C-H(2,3,5) that lie in the same plane. These nuclei define a four-center interaction where the electronic delocalization produced among the sigma(C-H) bonds provide a stabilization of the three C-H bonds involved in this interaction (the remaining two C-H bonds are similar to those belonging to the nonprotonated species). Our results show that bonding situations with a higher number of atom arrays are possible in protonated hydrocarbons.     

Bonding in some covalent derivatives of the 1,2,3,4-thiatriazole-5-thiolate anion. A topological study

The study of pseudohalides has found a deep interest to nonmetal chemists for many years. Due to the similarities between the halides and the pseudohalides, the pseudohalide family of compounds is of fundamental chemical interest. The pseudohalide concept was introduced in 1925 and since its introduction, the pseudohalide principle has been used extensively in nonmetal chemistry to predict the structure and stability of many molecular species.

The so-called ‘azidodithiocarbonate’ anion, more properly referred to as the 1,2,3,4-thiatriazole-5-thiolate anion, CS2N3-, is of particular interest. In a short communication we have recently reported the topological study of some CS2N3-containing species reported by Crawford et al. Previous reports on these compounds showed that in covalent derivatives, not only does the ring remain intact but also the site of attachment of the R group is most likely at the exocyclic sulfur atom in contrast to the previously suggested N-R connectivity. Therefore, the structure and bonding of derivatives of the CS2N3- moiety is clearly an important question.

With that in our mind, we undertook a topological analysis, based on the AIM theory, to gain more insight into the bonding in covalent derivatives of CS2N3- moiety, trying to find an explanation to the origin of the NH and S-H connectivities. The question is: which is the reason that makes all the covalent derivatives prefer the S-R connectivity while the hydracid has an N-H one?     

Theoretical studies on the structure and spectroscopic properties of pseudohalides

Pseudohalogen-containing compounds have attracted significant interest among nonmetal chemists and theorists, not only owing to their potential use in various fields but also due to difficulties in their experimental preparation and characterization. Since its introduction in 1925, the pseudohalide principle has been used extensively and, therefore, a remarkable progress has been made in the experimental and theoretical research on the compounds of this kind. In this work, we review studies on structural investigations and theoretical characterizations of several pseudohalide-containing compounds in order to contribute to better understanding of the chemistry of many such species.     

Synthesis,characterization and biological properties of vanadyl(IV) complexes of diclofenac and indomethacin: an experimental and theoretical study

Two new vanadyl(IV) complexes with the non‐steroidal antiinflammatory drugs Indomethacin and Diclofenac were synthesized and characterized by elemental analysis, electronic, diffuse reflectance and FTIR spectroscopies and thermal behavior. The structures of the oxo‐vanadium(IV) complexes were obtained by carrying out ab initio calculations (B3LY/3–21G**) owing to the difficulties of obtaining single crystals of good quality for X‐ray studies. Indomethacin and Diclofenac did not cause any effect when tested on cellular proliferation in two osteoblast‐cell lines in culture (MC3T3E1 and UMR106). The biological effect of the complexes depends on the cellular type and on the nature of the coordinated ligands. Copyright © 2005 John Wiley & Sons, Ltd.     

Topological insights into the nature of the halogen-carbon bonds in dimethylhalonium ylides and their cations

In this study the nature of the bonding in a series of dimethylhalonium ylides (fluoronium, chloronium, bromonium and iodonium) was analyzed by means of topological methodologies (AIM and ELF analysis), to document the changes in the nature of the C-X bonds (X = F, Cl, Br, I) upon the series. For the sake of comparison the same study was performed on the corresponding dimethylhalonium cations (XC 2H 6 (+)) and the XCH 3 series. The wave functions used for the topological analysis were obtained at B3LYP level using extended triple-zeta basis sets. The formation of the cationic XC 2H 6 (+) structures can be interpreted to arise from the interaction between the XCH 3 and CH 3 (+) moieties. The resultant structures can be explained in terms of the superposition of two electrostatically interacting and two dative mesomeric structures. The halogen-carbon bonds have all the characteristics of the charge-shift (CS) bonds. The analysis of the C-X bond in the XC 2H 5 series shows a progressive reinforcing of the CH 3X-CH 2 bond, from FC 2H 5 that can be considered as formed from two fragments, FCH 3 and CH 2, to IC 2H 5, in which the CH 3I-CH 2 bond has all the features of a multiple bond involving atoms bearing lone pairs. Particularly interesting is BrC 2H 5, in which a special type of bond (hybrid covalent-dative double bond) has been characterized. The energetic stability of the XC 2H 5 structures with respect to the dissociation into the XCH 2 + CH 3 and XCH 3 + CH 2 ground-state fragments was studied in detail.     

Improved QSAR Analysis of the Toxicity of Aliphatic Carboxylic Acids

The results of a QSPR study of the toxicity of carboxylic acids in aqueous solution are reported. The molecular set comprises 35 carboxylic acids with the corresponding pK _a values in water. The set of molecular and topological parameters includes electrotopological state of the carboxy and methyl groups, molar refractivity, refractive index, n-octanol-water partition coefficient logKo/w, surface tension, and polarizability. Quite reasonable estimates are obtained, which improve the results of previous theoretical calculations.