An Update on Molecularly Imprinted Polymer Design through a Computational Approach to Produce Molecular Recognition Material with Enhanced Analytical Performance

Molecularly imprinted polymer (MIP) computational design is expected to become a routine technique prior to synthesis to produce polymers with high affinity and selectivity towards target molecules. Furthermore, using these simulations reduces the cost of optimizing polymerization composition. There are several computational methods used in MIP fabrication and each requires a comprehensive study in order to select a process with results that are most similar to properties exhibited by polymers synthesized through laboratory experiments. Until now, no review has linked computational strategies with experimental results, which are needed to determine the method that is most appropriate for use in designing MIP with high molecular recognition. This review will present an update of the computational approaches started from 2016 until now on quantum mechanics, molecular mechanics and molecular dynamics that have been widely used. It will also discuss the linear correlation between computational results and the polymer performance tests through laboratory experiments to examine to what extent these methods can be relied upon to obtain polymers with high molecular recognition. Based on the literature search, density functional theory (DFT) with various hybrid functions and basis sets is most often used as a theoretical method to provide a shorter MIP manufacturing process as well as good analytical performance as recognition material.     

Erratum: Synthesis and characterization of diorganotin(IV) complexes of Schiff bases with ONO‐type donors and crystal structure of [N‐(2‐hydroxy‐4‐nitrophenyl)‐3‐ethoxysalicylideneiminato]diphenyltin(IV)

The article referenced above was first published online on 30 August 2007 with incorrect pagination; the pagination has now been corrected online and in print. Copyright © 2007 John Wiley & Sons, Ltd.     

Nitroxide‐mediated radical polymerization in miniemulsion: Bimolecular termination in monomer‐free model systems

Bimolecular termination in nitroxide‐mediated radical polymerization in miniemulsion has been investigated through the heating of a polystyrene–2,2,6,6‐tetramethylpiperidinyl‐1‐oxy macroinitiator and its 4‐hydroxy‐2,2,6,6‐tetramethylpiperidinyl‐1‐oxy analogue in an aqueous toluene dispersion with sodium dodecyl benzenesulfonate as a surfactant at 125 °C. The level of bimolecular termination by combination, evaluated from the high‐molecular‐weight shoulder, was higher in miniemulsion than in solution and increased with decreasing particle size. Quantitative analysis revealed that these results cannot be rationalized solely by nitroxide partitioning to the aqueous phase. The results are explained by an interface effect, by which nitroxide is adsorbed or located at the aqueous–organic interface. © 2007 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 45: 4995–5004, 2007     

Sol-Gel Processing of PbZrO3 Thin Films

PbZrO₃ (PZ) thin films have been prepared by 2-methoxyethanol route from lead oxide or lead acetate and zirconium n-butoxide. The use of lead oxide as lead source and the seeding layer of TiO₂ on Pt/TiO₂/SiO₂/Si substrate facilitate the formation of the perovskite phase.     

Novel ternary cobalt(II) and nickel(II) complexes of N-phthaloylglycinate. Synthesis, characterization and X-ray crystal structure

A new series of N-phthaloylglycineate (N-phthgly) ternary complexes of cobalt(II) and nickel(II) with imidazole (imi), N-methylimidazole (mimi) and 2,2′-bipyridyl (bipy) have been synthesized and characterized by elementary analyses, IR spectroscopy, thermogravimetric analysis. X-ray crystal structure analyses of the three complexes of [Co(mimi)₂(N-phthgly)₂] (1), [Co(bipy)(OH₂)₄](N-phthgly)₂ (2) and [Ni(imi)₂(N-phthgly)₂(OHCH₃)₂] (3) were also carried out. In complex (1), the Co(II) exists in a distorted tetrahedral enviroment, where two nitrogen atoms of two methylimidazole molecules and two oxygen atoms of the carboxylate group of two N-phthaloylglycinate molecules are coordinated. On the other hand, in complex (2) the cobalt atom coordinates a 2,2′-bipyridine molecule and four water oxygen atoms forming a distorted octahedral conformation. A molecule of N-phthaloylglycinate is connected by van der waals contact and H-bonds. For complex (3), the nickel atom is surrounded by four oxygens (two oxygens of two different N-phthaloylglycinate molecules and two of methanol ligand) in the basal plane of octahedron along with two imidazole nitrogen atoms at the apical positions. Strong intramolecular H-bond exists between the uncoordinated carboxylic oxygen of the N-phthaloylglycinate ligand and the O–H of the methanol group.     

FT-IR spectroscopic detection of pesticide after sorption onto modified pumice

Organoclays can be prepared by modification of the surface with a cationic surface active compound and used for the immobilisation or separation of non-polar contaminants from polluted waters. In this work pumice is used instead of clay material. Batch system experiments were performed for the modification of pumice surface with hexadecyltrimethylammonium bromide. Modification of pumice and then the sorption of pesticide, Fenvalerate, from water have been traced by FT-IR spectroscopy.     

Coordination compounds of hydrazine derivatives with transition metals,part XVIII. Cobalt(II) and cobalt(III) chelates with schiff bases derived from hydrazine-S-methyldithiocarboxylate and thiosemicarbazide

Summary The reactions of aldehydic and ketonic Schiff bases derived from hydrazine-S-methyl dithiocarboxylate and thiosemicar-bazide with cobalt(II) acetate were investigated. Octahedral tris ligand cobalt(III) chelates were formed with aldehydic Schiff bases whereas tetrahedral bis ligand cobalt (II) chelates were isolated with ketonic Schiff bases.N-isopropylidene hydrazine-S-methyldithiocarboxylate, however, gave both octahedral tris cobalt(III) and tetrahedral bis cobalt(II) chelates. These results are interpreted in terms of the steric requirements of the Schiff base used.     

Single-site mutation and secondary structure stability: an isodesmic reaction approach. The case of unnatural amino acid mutagenesis Ala-->Lac

A method is described to evaluate backbone interactions in proteins via computational unnatural amino acid mutagenesis. Several N-acetyl polyalanyl amides (AcA(n)NH(2)) were optimized in the representative helical (3(10)-, 4(13)-, and a "hybrid" kappa-helix, n = 7, 9, 10, 14) and hairpin (two- and three-stranded antiparallel beta-sheets with type I turns betaalphaalphaepsilon, n = 6, 9, 10) conformations, and extended conformers of N-acetyl polyalanyl methylamides (n = 2, 3) were used to derive multistranded beta-sheet fragments. Subsequently, each residue of every model structure was substituted, one at a time, with l-lactic acid. The resulting mutant structures were again optimized, and group-transfer energies DeltaE(GT) were obtained as heats of the isodesmic reactions: AcA(n)NHR + AcOMe --> AcA(x)LacA(y)NHR + AcNHMe (R = H, CH(3)). These group-transfer energies correlate with the degree of charge polarization of the substituted peptide linkages as measured by the difference Deltae in H and O Mulliken populations in HN-C=O and with the H-bond distances in the "wild-type" structures. A good correlation obtains for the HF/3-21G and B3LYP/6-31G* group-transfer energies. The destabilization effects are interpreted in terms of loss of interstrand and intrastrand H-bonds, decrease in Lewis basicity of the C=O group, and O...O repulsion. On the basis of several comparisons of Ala --> Lac DeltaE(GT)'s with heats of the NH --> CH(2) substitutions, the latter contribution is estimated (B3LYP/6-31G*) to range between 1.5 and 2.4 kcal mol(-1), a figure close to the recent experimental DeltaDeltaG(o) value of 2.6 kcal mol(-1) (McComas, C. C.; Crowley, B. M.; Boger, D. L. J. Am.Chem. Soc. 2003, 125, 9314). The partitioning yields the following maximum values of the electronic association energy of H-bonds in the examined sample of model structures (B3LYP/6-31G* estimates): 3(10)-helix D(e) = -1.7 kcal mol(-1), alpha-helix D(e) = -3.8 kcal mol(-1), beta-sheet D(e) = -6.1 kcal mol(-1). The premise of experimental evaluations of the backbone-backbone H-bonding that Ala --> Lac substitution in proteins is isosteric (e.g., Koh, J. T.; Cornish, V. W.; Schultz, P. G. Biochemistry 1997, 36, 11314) is often but not always corroborated. Examination of the integrity of H-bonding pattern and phi(i), psi(i) distribution identified several mutants with significant distortions of the "wild-type" structure resulting inter alia from the transitions between i, i + 3 and i, i + 4 H-bonding in helices, observed previously in the crystallographic studies of depsipeptides (Ohyama, T.; Oku, H.; Hiroki, A.; Maekawa, Y.; Yoshida, M.; Katakai, R. Biopolymers 2000, 54, 375; Karle, I. L.; Das, C.; Balaram, P. Biopolymers 2001, 59, 276). Thus, the isodesmic reaction approach provides a simple way to gauge how conformation of the polypeptide chain and dimensions of the H-bonding network affect the strength of backbone-backbone C=O...HN bonds. The results indicate that the stabilization provided by such interactions increases on going from 3(10)-helix to alpha-helix to beta-sheet.     

Synthesis and reduction of some 1H-2,1,3-benzothiadiazin-4(3H) one 2,2-dioxides

Several 2,1,3-benzothiadiazin-4(3H) one 2,2-dioxides were synthesized as possible sweetening agents by reacting sulfamoyl chloride with various anthranilic acid derivatives. The isolation of 1-methyl-4-methoxy-2,1,3-benzothiadiazine 2,2-dioxide and preparation of 3,4-dihydro-2,1,3-benzothiadiazine 2,2-dioxide is also reported.     

Inter-element interferences in the determination of arsenic and antimony by hydride generation atomic absorption spectrometry with a quartz tube atomizer

The interferences between arsenic and antimony on each other during the hydride generation atomic absorption spectrometry (HGAAS) determination of arsenic and antimony using a quartz tube atomizer (QTA) were examined. In order to eliminate or reduce such interferences by selective heat decomposition of arsine and stibine, a Pyrex adsorption U-tube trap containing glass wool was placed between the drying tube and the quartz tube atomizer. Although at 250 °C stibine decomposes and is held almost completely by the trap, arsine is also decomposed to an extent of 24% and, therefore, thermal decomposition is not useful to eliminate antimony interference on arsenic determination. The effect of coating the glass wool in the U-tube with antimony on the arsenic suppression of the antimony signal was studied. The results showed that the antimony coating in the U-tube could not hold arsenic effectively and its interference on the antimony signal could not be eliminated by this means. In the second part of the study, oxygen was supplied to the quartz tube atomizer during atomization in order to study the effect of supplying oxygen on the antimony signal and on the interference of arsenic in the antimony determination. Sensitivity was increased in the presence of oxygen and interferences of arsenic on antimony determination was decreased by about 10% when oxygen was supplied. It was also observed that the extent of interferences depended mainly on the interferent concentration rather than the analyte concentration.