Identification of archaeal proteins that affect the exosome function in vitro

Background  

The archaeal exosome is formed by a hexameric RNase PH ring and three RNA binding subunits and has been shown to bind and degrade RNA in vitro. Despite extensive studies on the eukaryotic exosome and on the proteins interacting with this complex, little information is yet available on the identification and function of archaeal exosome regulatory factors.     

High precision delta(17)O isotope measurements of oxygen from silicates and other oxides: method and applications

The use of infrared laser-assisted fluorination to release oxygen from milligram quantities of silicates or other oxide mineral grains is a well-established technique. However, relatively few studies have reported the optimisation of this procedure for oxygen-17 isotope measurements. We describe here details of an analytical system using infrared (10 μm) laser-assisted fluorination, in conjunction with a dual inlet mass spectrometer of high resolving power ( approximately 250) to provide (17)O and (18)O oxygen isotope measurements from 0.5-2 mg of silicates or other oxide mineral grains. Respective precisions (1) of typically 0.08 and 0.04 per thousand are obtained for the complete analytical procedure. Departures from the mass-dependent oxygen isotope fractionation line are quantified by Delta(17)O; our precision (1) of such measurements on individual samples is shown to be +/-0.024 per thousand. In turn, this permits the offset between parallel, mass-dependent fractionation lines to be characterised to substantially greater precision than has been possible hitherto. Application of this system to investigate the (17)O versus (18)O relationship for numerous terrestrial whole-rock and mineral samples, of diverse geological origins and age, indicates that the complete data set may be described by a single, mass-dependent fractionation line of slope 0.5244+/- 0.00038 (standard error). Copyright 1999 John Wiley & Sons, Ltd.     

The quantum defect: the true measure of time-dependent density-functional results for atoms

Quantum defect theory is applied to (time-dependent) density-functional calculations of Rydberg series for closed shell atoms: He, Be, and Ne. The performance and behavior of such calculations are much better quantified and understood in terms of the quantum defect rather than transition energies.     

Thermoresponsive Poly(2‐oxazine)s

The monomers 2‐methyl‐2‐oxazine (MeOZI), 2‐ethyl‐2‐oxazine (EtOZI), and 2‐n‐propyl‐2‐oxazine (nPropOZI) were synthesized and polymerized via the living cationic ring‐opening polymerization (CROP) under microwave‐assisted conditions. pEtOZI and pnPropOZI were found to be thermoresponsive, exhibiting LCST behavior in water and their cloud point temperatures (T_CP) are lower than for poly(2‐oxazoline)s with similar side chains. However, comparison of poly(2‐oxazine) and poly(2‐oxazoline)s isomers reveals that poly(2‐oxazine)s are more water soluble, indicating that the side chain has a stronger impact on polymer solubility than the main chain. In conclusion, variations of both the side chains and the main chains of the poly(cyclic imino ether)s resulted in a series of distinct homopolymers with tunable T_CP.     

A NEW FINITE ELEMENT APPROXIMATION OF A STATE-CONSTRAINED OPTIMAL CONTROL PROBLEM

In this paper, we study numerical methods for an optimal control problem with pointwise state constraints. The traditional approaches often need to deal with the deltasingularity in the dual equation, which causes many difficulties in its theoretical analysis and numerical approximation. In our new approach we reformulate the state-constrained optimal control as a constrained minimization problems only involving the state, whose optimality condition is characterized by a fourth order elliptic variational inequality. Then direct numerical algorithms （nonconforming finite element approximation） are proposed for the inequality, and error estimates of the finite element approximation are derived. Numerical experiments illustrate the effectiveness of the new approach.     

Zirconium scandium oxide nitrides: Formation and decomposition followed in situ by XRD and thermal analysis

The dark green powder of Zr₅₀Sc₁₂O₄₃N₅₀ was produced from Zr₅₀Sc₁₂O₁₁₈ under a constant flow of ammonia. Zr₅₀Sc₁₂O₄₃N₅₀ crystallizes cubic with space group and in the C-M₂O₃ structure (bixbyite structure). The reaction path was followed by in situ X-ray diffraction and showed that the substitution of 3O²⁻ by 2N³⁻ generates additional vacancies on the anion sites in the fluorite basis structure. On the way to the bixbyite structure time- and temperature-controlled X-ray diffractograms revealed the known fluorite-related superstructures (i.e. the vacancy distribution) for the compositions M₁₄X₂₆ and M₇X₁₂. The reverse process, i.e. the oxidation of the oxide nitride was followed in DTA/TG experiments exhibiting the different vacancy orderings at 420, 500 and .     

Main‐chain chiral poly(2‐oxazoline)s: Influence of alkyl side‐chain on secondary structure formation in solution

The synthesis and microwave‐assisted polymerization of a series of chiral 2‐oxazolines with varying alkyl pendant groups, namely R‐2‐ethyl‐4‐ethyl‐2‐oxazoline (R‐EtEtOx), R‐2‐butyl‐4‐ethyl‐2‐oxazoline (R‐BuEtOx), R‐2‐octyl‐4‐ethyl‐2‐oxazoline, 2‐nonyl‐4‐ethyl‐2‐oxazoline, and R‐2‐undecyl‐4‐ethyl‐2‐oxazoline (R‐UndeEtOx), are reported. A kinetic investigation of the polymerization of R‐EtEtOx revealed a living polymerization mechanism. The poly(2‐oxazoline)s containing an ethyl, butyl, and octyl pendant group form similar chiral structures according to circular dichroism measurements. When the pendant group is further elongated, the chiral structure becomes more flexible in trifluoroethanol and the thermal response in hexafluoroisopropanol (HFIP) significantly changes. The short‐range structure of poly‐R‐BuEtOx dissolved in HFIP is thermoresponsive in a complex way, due to HFIP hydrogen bonding to the polymeric amide groups, whereas the long‐range structure determined from small angle neutron scattering is insensitive to temperature demonstrating that only the local secondary structure changes with temperature. In addition, the chiral structure of poly‐R‐UndeEtOx depends on the polarity of the solvent. The short‐range structure becomes more flexible in polar solvents, most likely due to interactions with the amide groups disturbing the secondary structure. In contrast, the long‐range structural transition from an ellipsoid in the apolar n‐hexane to a rod structure in the polar n‐butanol is ascribed to better solvation of the long aliphatic side chains. © 2011 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2011