Assessing calves as carriers of Cryptosporidium and Giardia with zoonotic potential on dairy and beef farms within a water catchment area by mutation scanning

In the present study, we undertook a molecular epidemiological survey of Cryptosporidium and Giardia in calves on three dairy and two beef farms within an open drinking water catchment area (Melbourne, Australia). Faecal samples (n = 474) were collected from calves at two time points (5 months apart) and tested using a PCR‐based mutation scanning‐targeted sequencing phylogenetic approach, employing regions within the genes of small subunit (SSU) of ribosomal RNA (designated partial SSU), 60 kDa glycoprotein (pgp60) and triose phosphate isomerase (ptpi) as genetic markers. Using partial SSU, the C. bovis, C. parvum, C. ryanae and a new genotype of Cryptosporidium were characterised from totals of 74 (15.6%), 35 (7.3%), 37 (7.8%) and 9 (1.9%) samples, respectively. Using pgp60, C. parvum genotype IIa subgenotype A18G3R1 was detected in 29 samples. Using ptpi, G. duodenalis assemblages A and E were detected in totals of 10 (2.1%) and 130 (27.4%) samples, respectively. The present study showed that a considerable proportion of dairy and beef calves in this open water catchment region excreted Cryptosporidium (i.e. subgenotype IIaA18G3R1) and Giardia (e.g. assemblage A) that are consistent with those infecting humans, inferring that they are of zoonotic importance. Future work should focus on exploring, in a temporal and spatial way, whether these parasites occur in the environment and water of the catchment reservoir.     

Highly sensitive non‐isotopic restriction endonuclease fingerprinting of nucleotide variability in the gp60 gene within Cryptosporidium species,genotypes and subgenotypes infective to humans,and its implications

The high‐resolution analysis of genetic variation has major implications for the identification of parasites and micro‐organisms to species and subspecies as well as for population genetic and epidemiological studies. In this study, we critically assessed the effectiveness of a PCR‐based restriction endonuclease fingerprinting (REF) method for the detection of mutations in the 60 kDa glycoprotein gene (gp60) of Cryptosporidium, a genus of parasitic protists of major human and animal health importance globally. This gene displays substantial intraspecific variability in sequence, particularly in a TCA (perfect and imperfect) microsatellite region, is present as a single copy in the nuclear genome and is used widely as a marker in molecular epidemiological studies of Cryptosporidium hominis and C. parvum, the two predominant species that infect humans. The results of this study demonstrated an exquisite capacity of REF to detect nucleotide variability in the gp60 gene within each of the two species. The differentiation of genotypes/subgenotypes based on REF analysis was supported by targeted sequencing, allowing the detection of levels of variation as low as a single‐nucleotide transversion for amplicons of ∼1 kb in size. The high‐throughput potential and relatively low‐cost of REF make it a particularly useful tool for large‐scale genetic analyses of C. hominis and C. parvum. REF could also be utilized for comparative surveys of genetic variability across large nuclear genomic regions. Such analyses of Cryptosporidium in clinical and environmental samples by REF have important implications for identifying sources of infection, modes of transmission and/or possible infectivity to humans, thus assisting in the surveillance and control of cryptosporidiosis. Given its excellent mutation detection capacity, REF should find broad applicability to various single‐copy genes as well as a wide range of other protozoan and metazoan parasites. (The nucleotide sequences reported in this article are available in the GenBank database under accession numbers GU214343–GU214371).     

Guiding Molecularly Imprinted Polymer Design by Pharmacophore Modeling

Molecularly imprinted polymers (MIP) combine the selectivity of immunoaffinity chromatography with the robustness of common solid-phase extraction in what is referred to as molecularly imprinted solid-phase extraction (MISPE). This contribution shows how MIP design may be guided by pharmacophore modeling for the example of citrinin, which is an emerging mycotoxin from cereals. The obtained pharmacophore model allowed searching public databases for a set of citrinin-mimicking molecular surrogates. Imprinted and non-imprinted polymers were subsequently obtained through bulk and core-shell polymerization in the presence of these surrogates. Evaluation of their binding ability for citrinin and structurally related ochratoxin A revealed a promising MIP derived from rhodizonic acid. A protocol for MISPE of citrinin from cereals was subsequently developed and compared to immunoaffinity chromatography with respect to clean-up efficiency and recovery.     

Ca(AsF3)(AsF6)2: the first alkaline earth metal cation coordinated to AsF3

Ca(AsF₃)(AsF₆)₂ was prepared by the reaction of CaF₂ with excess AsF₅ in AsF₃ solvent. The compound crystallizes in an orthorhombic crystal system, space group Pnma, with a =1034.9(4) pm, b = 1001.7(4) pm and c = 1088.4(4) pm, V = 1.1283(8) nm³ and Z = 4. Calcium is coordinated to eight fluorine atoms, with six fluorine atoms located at the corners of a regular trigonal prism originating from six AsF₆ units. Two rectangular faces of the trigonal prism are capped by fluorine atoms from two fluorine bridged AsF₃ molecules. For the first time, AsF₃ is shown to serve as a bridging ligand to two metal cations, with bridging distances of F(AsF₃)-Ca = 241.1 and 243.2 pm. It was found, again for the first time, that the bridging As-F distances are shorter (172.4 and 173.1 pm) than the terminal As-F distance (184.5 pm). The Raman spectrum shows vibrational modes that are readily assigned to AsF₃ and AsF₆⁻.     

Multi-criteria decision making development of ion chromatographic method for determination of inorganic anions in oilfield waters based on artificial neural networks retention model

This paper describes the development of ad hoc methodology for determination of inorganic anions in oilfield water, since their composition often significantly differs from the average (concentration of components and/or matrix). Therefore, fast and reliable method development has to be performed in order to ensure the monitoring of desired properties under new conditions. The method development was based on computer assisted multi-criteria decision making strategy. The used criteria were: maximal value of objective functions used, maximal robustness of the separation method, minimal analysis time, and maximal retention distance between two nearest components. Artificial neural networks were used for modeling of anion retention. The reliability of developed method was extensively tested by the validation of performance characteristics. Based on validation results, the developed method shows satisfactory performance characteristics, proving the successful application of computer assisted methodology in the described case study.     

Analysis of nucleotide variation within the triose‐phosphate isomerase gene of Giardia duodenalis from sheep and its zoonotic implications

This study explored the genetic composition of Giardia in fecal samples from 284 individual lambs on pasture‐based sheep farms in three regions of Victoria, Australia. An approach, combining targeted sequencing, phylogenetic analysis and PCR‐coupled restriction endonuclease fingerprinting, was used to identify and genetically categorize Giardia present in 43 (15.1%) of the 284 samples and to infer their zoonotic potential. The specific identity and genetic classification were based on the phylogenetic analysis of sequence data for a portion of the triose‐phosphate isomerase gene. Fourteen different sequence variants (including seven sequences that contained between one and five polymorphic sites) representing two distinct assemblages of Giardia (recognized in the current literature) were defined, of which 13 were new records. One dominant sequence type (with accession no. GQ444447, representing a genotype within assemblage A) has been detected previously in humans and is thus considered to be of zoonotic potential. (Nucleotide sequences reported in this article are available in the GenBank database under accession nos. GQ444447–GQ444451 and GQ444454–GQ444462).     

Hydrothermal synthesis and characterization of 2D M(II)-Quinate (M = Co,Zn) metal-organic lattice assemblies: solid-state solution structure correlation in M(II)-hydroxycarboxylate systems

Co(II) and Zn(II) ions exhibit variable reactivity toward O-containing ligands in aqueous media, affording isolable materials with distinct solid-state lattice properties. d-(-)-quinic acid is a cellular α-hydroxycarboxylate metal ion binder, which reacts with Co(II) and Zn(II) under pH-specific hydrothermal conditions, leading to the isolation of two new species [Co(2)(C(7)H(11)O(6))(4)](n)·nH(2)O (1) and [Zn(3)(C(7)H(11)O(6))(6)](n)·nH(2)O (2). Compound 1 was characterized by elemental analysis, spectroscopic techniques (FT-IR, UV-visible, EPR), magnetic studies, and X-ray crystallography. Compound 2 was characterized by elemental analysis, spectroscopic techniques (FT-IR, ESI-MS), and X-ray crystallography. The 2D molecular lattices in 1 and 2 reveal the presence of octahedral M(II) units bound exclusively to quinate in a distinct fashion, thereby projecting a unique chemical reactivity in each investigated system. The magnetic susceptibility and solid-state/frozen solution EPR data on 1 support the presence of a high-spin octahedral Co(II) in an oxygen environment, having a ground state with an effective spin of S = 1/2. Concurrent aqueous speciation studies on the binary Zn(II)-quinate system unravel the nature and properties of species arising from Zn(II)-quinate interactions as a function of pH and molar ratio. The physicochemical profiles of 1 and 2, in the solid state and in solution, earmark the importance of (a) select synthetic hydrothermal reactivity conditions, affording new well-defined lattice dimensionality and nuclearity M(II)-quinate materials, (b) structural speciation approaches delineating solid state-aqueous solution correlations in the binary M(II)-quinate systems, and (c) pH-specific chemical reactivity in binary M(II)-quinate systems reflecting structurally unique associations of simple aqueous complexes into distinctly assembled 2D crystalline lattices.     

Coordination of XeF2 to calcium and cadmium hexafluorophosphates(V)

[M(XeF2)5](PF6)2 (M = Ca, Cd) complexes were prepared by the reaction of MF2 and XeF2 under pressure of gaseous PF5 in anhydrous HF as solvent. The coordination sphere of the Ca atom consists of nine fluorine atoms: three from two PF6(-) units (one bidentate and one monodentate) and one from each of six XeF2 molecules. The coordination sphere of the Cd atom consists of eight fluorine atoms: one from each of two PF6(-) units and one from each of six XeF2 molecules. Two of the XeF2 ligands about M in each compound are bridging ligands and are each linked to two M, generating infinite (-M-F-Xe-F-M-F-Xe-F-) chains along the b-axis in the Ca salt and along the c-axis in the Cd compound. The Cd2+ cation is smaller and more electronegative than the Ca2+ cation. These differences account for the higher F ligand coordination in the Ca2+ salt and for other structural features that distinguish them. The different stoichiometry of the PF6(-) salts when compared with their AsF6(-) analogues, which have the composition [M(XeF2)4](AsF6)2 (M = Ca, Cd), is in accord with the lower F ligand charge in the AsF6(-) when compared with that in the PF6(-) compound. Indeed, the AsF6(-) ligand charges appear to be similar to those in the XeF2-bridged species.     

Direct identification of propargyl radical in combustion flames by vacuum ultraviolet photoionization mass spectrometry

We have developed an effusive laser photodissociation radical source, aiming for the production of vibrationally relaxed radicals. Employing this radical source, we have measured the vacuum ultraviolet (VUV) photoionization efficiency (PIE) spectrum of the propargyl radical (C(3)H(3)) formed by the 193 nm excimer laser photodissociation of propargyl chloride in the energy range of 8.5-9.9 eV using high-resolution (energy bandwidth = 1 meV) multibunch synchrotron radiation. The VUV-PIE spectrum of C(3)H(3) thus obtained is found to exhibit pronounced autoionization features, which are tentatively assigned as members of two vibrational progressions of C(3)H(3) in excited autoionizing Rydberg states. The ionization energy (IE = 8.674 +/- 0.001 eV) of C(3)H(3) determined by a small steplike feature resolved at the photoionization onset of the VUV-PIE spectrum is in excellent agreement with the IE value reported in a previous pulsed field ionization-photoelectron study. We have also calculated the Franck-Condon factors (FCFs) for the photoionization transitions C(3)H(3) (+)(X;nu(i),i = 1-12)<--C(3)H(3)(X). The comparison between the pattern of FCFs and the autoionization peaks resolved in the VUV-PIE spectrum of C(3)H(3) points to the conclusion that the resonance-enhanced autoionization mechanism is most likely responsible for the observation of pronounced autoionization features. We also present here the VUV-PIE spectra for the mass 39 ions observed in the VUV synchrotron-based photoionization mass spectrometric sampling of several premixed flames. The excellent agreement of the IE value and the pattern of autoionizing features of the VUV-PIE spectra observed in the photodissociation and flames studies has provided an unambiguous identification of the propargyl radical as an important intermediate in the premixed combustion flames. The discrepancy found between the PIE spectra obtained in flames and photodissociation at energies above the IE(C(3)H(3)) suggests that the PIE spectra obtained in flames might have contributions from the photoionization of vibrationally excited C(3)H(3) and/or the dissociative photoionization processes involving larger hydrocarbon species formed in flames.     

Mg(XeF(2))(n)()](AsF(6))(2) (n = 4, 2): first compounds of magnesium with XeF(2)

The reaction between Mg(AsF(6))(2) and XeF(2) in anhydrous HF (aHF) at room temperature yields two compounds with XeF(2) bonded directly to the Mg(2+) cation: [Mg(XeF(2))(4)](AsF(6))(2); [Mg(XeF(2))(2)](AsF(6))(2). The 1:4 compound is obtained with excess XeF(2) while the 1:2 compound is prepared from stoichiometric amounts of Mg(AsF(6))(2) and XeF(2). [Mg(XeF(2))(4)](AsF(6))(2) crystallizes in an orthorhombic crystal system, space group P2(1)2(1)2(1), with a = 8.698(15) A, b = 14.517(15) A, c = 15.344(16) A, V = 1937(4) A(3), and Z = 4. The octahedral coordination sphere of Mg consists of one fluorine atom from each of the four XeF(2) molecules and two fluorine atoms from the two AsF(6) units. [Mg(XeF(2))(2)](AsF(6))(2) crystallizes in the orthorhombic crystal system, space group Pbam, with a = 8.9767(10) A, b = 15.1687(18) A, c = 5.3202(6) A, V = 724.42(14) A(3), and Z = 2. The octahedral coordination sphere consists of two fluorine atoms, one from each of the two XeF(2) molecules and four fluorine atoms from the four bridging AsF(6) units.