Parallel processing of remotely sensed data: Application to the ATSR-2 instrument

Massively parallel computational paradigms can mitigate many issues associated with the analysis of large and complex remotely sensed data sets. Recently, the Beowulf cluster has emerged as the most attractive, massively parallel architecture due to its low cost and high performance. Whereas most Beowulf designs have emphasized numerical modeling applications, the Parallel Image Processing Environment (PIPE) specifically addresses the unique requirements of remote sensing applications. Automated, parallelization of user-defined analyses is fully supported. A neural network application, applied to Along Track Scanning Radiometer-2 (ATSR-2) data shows the advantages and performance characteristics of PIPE.     

Low-temperature photon echo study of 2-MTHF glass under high pressure

A high-pressure photon echo study of the low-temperature dynamics of rhodamine 640 in a 2-methyltetrahydrofuran (2-MTHF) molecular glass is reported. High pressure is found to decrease the homogeneous dephasing rate comparably to the volume compression ratio. The pressured-induced line narrowing is also qualitatively similar to high-pressure hole burning results reported for a 2-MTHF glass doped with bacteriochlorophyll a. The results are consistent with a pressure-induced decrease in the number of tunneling two-level systems (TLSs) that may be associated with collapsible void space in the molecular glass. Comparable high-pressure photon echo studies of organic polymer glasses over the same low-temperature range do not show line narrowing at high pressure, suggesting an intrinsic difference in the nature of TLSs for molecular versus polymer glasses.     

Statistical analyses of electromyographic activity in spasmodic dysphonic and normal control subjects

Heterogeneity in the quality and task sensitivity of vocal symptoms in the spasmodic dysphonia (SD) population contributes to controversy as to whether this is a single disorder or two disorders with different etiologies (neurogenic versus psychogenic). Perceptual and acoustic assessments of vocal symptoms are inadequate to resolve this controversy. However, myoelectric events are intimately proximal to the source of vocal disruption and may be informative. The present report employs statistical modeling of quantitative amplitude measures of electromyographic activity recorded from thyroarytenoid to examine neuromotor bases of vocal symptoms in SD. Consideration of perceptual ratings of the quality and task sensitivity of vocal symptoms in the context of statistical models provides support for the conclusion that the range of vocal symptoms identified as SD represents a single, neurogenic disorder.     

The function of Shp2 tyrosine phosphatase in the dispersal of acetylcholine receptor clusters

Background

Tone languages such as Thai and Mandarin Chinese use differences in fundamental frequency (F₀, pitch) to distinguish lexical meaning. Previous behavioral studies have shown that native speakers of a non-tone language have difficulty discriminating among tone contrasts and are sensitive to different F₀ dimensions than speakers of a tone language. The aim of the present ERP study was to investigate the effect of language background and training on the non-attentive processing of lexical tones. EEG was recorded from 12 adult native speakers of Mandarin Chinese, 12 native speakers of American English, and 11 Thai speakers while they were watching a movie and were presented with multiple tokens of low-falling, mid-level and high-rising Thai lexical tones. High-rising or low-falling tokens were presented as deviants among mid-level standard tokens, and vice versa. EEG data and data from a behavioral discrimination task were collected before and after a two-day perceptual categorization training task.

Results

Behavioral discrimination improved after training in both the Chinese and the English groups. Low-falling tone deviants versus standards elicited a mismatch negativity (MMN) in all language groups. Before, but not after training, the English speakers showed a larger MMN compared to the Chinese, even though English speakers performed worst in the behavioral tasks. The MMN was followed by a late negativity, which became smaller with improved discrimination. The High-rising deviants versus standards elicited a late negativity, which was left-lateralized only in the English and Chinese groups.

Conclusion

Results showed that native speakers of English, Chinese and Thai recruited largely similar mechanisms when non-attentively processing Thai lexical tones. However, native Thai speakers differed from the Chinese and English speakers with respect to the processing of late F₀ contour differences (high-rising versus mid-level tones). In addition, native speakers of a non-tone language (English) were initially more sensitive to F₀ onset differences (low-falling versus mid-level contrast), which was suppressed as a result of training. This result converges with results from previous behavioral studies and supports the view that attentive as well as non-attentive processing of F₀ contrasts is affected by language background, but is malleable even in adult learners.     

Secondary ion yields produced by keV atomic and polyatomic ion impacts on a self-assembled monolayer surface

A suite of keV polyatomic or 'cluster' projectiles was used to bombard unoxidized and oxidized self-assembled monolayer surfaces. Negative secondary ion yields, collected at the limit of single ion impacts, were measured and compared for both molecular and fragment ions. In contrast to targets that are orders of magnitude thicker than the penetration range of the primary ions, secondary ion yields from polyatomic projectile impacts on self-assembled monolayers show little to no enhancement when compared with monatomic projectiles at the same velocity. This unusual trend is most likely due to the structural arrangement and bonding characteristics of the monolayer molecules with the Au(111). Copyright 1999 John Wiley & Sons, Ltd.     

Characterization of tunneling systems in molecular versus polymer glasses by high-pressure photon echo spectroscopy

Intrinsic differences between tunneling two-level systems (TLSs) in molecular versus polymeric glasses are revealed by studying the effect of compression on TLS dynamics. Photon echo studies under variable low-temperature (1.1-2.3 K) and high-pressure (0-30 kbar) conditions have been performed to contrast the effect of compression on molecular [2-methyl-tetrahydrofuran (2MTHF)] versus polymer [Polymethylmethacrylate (PMMA)] glasses. The pressure-induced reduction in the magnitude of the optical dephasing rate of rhodamine 640 in a molecular glass (2MTHF) is found to be comparable to the volume decrease of the glass (e.g., approximately 20% at 30 kbar), indicating that TLSs in 2MTHF are associated with void space or low-density regions of the glass. In contrast, the relative pressure insensitivity observed for organic polymer glasses (PMMA) supports the idea that these TLSs are associated with side chain defects. The power-law exponent for the temperature-dependent dephasing in 2MTHF also decreased significantly at high pressure, suggesting a change in the form of the TLS density of states upon compression of the molecular glass.     

Unusual aggregates from the oxidation of alkene self-assembled monolayers: a previously unrecognized mechanism for SAM ozonolysis?

Self-assembled monolayers (SAMs) of vinyl-terminated 3- and 8-carbon compounds were generated on Si substrates and reacted at room temperature with approximately 1 ppm gaseous O(3). A combination of atomic force microscopy (AFM), scanning electron microscopy (SEM), Auger electron spectroscopy (AES) and time-of-flight secondary ion mass spectrometry (TOF-SIMS) was used to study the surface composition and morphology after oxidation. A distribution of large ( approximately 0.1-10 microm) organic aggregates was formed, while the surrounding substrate became depleted of carbon compared to the unreacted SAM. This highly unusual result establishes that the mechanism of ozonolysis of alkene SAMs must have a channel that is unique compared to that in the gas phase or in solution, and may involve polymerization induced by the Criegee intermediate (CI). Oxidation at 60% RH led to the formation of a number of smaller aggregates, suggesting water intercepted the CI in competition with aggregate formation. The uptake of water, measured using transmission FTIR, was not increased upon oxidation of these films. In conjunction with literature reports of polymer formation from VOC-NO(x) photooxidations, these results suggest that formation of aggregates and polymers in the atmosphere is much more widespread than previously thought. The implications for the ozonolysis of alkenes on surfaces, for the transformation of organics in the atmosphere, and for the reactions and stability of unsaturated SAMs, are discussed.     

Relationship between charge-transfer interactions, redox potentials, and catalysis for different forms of the flavoprotein component of p-cresol methylhydroxylase

Thirty-three variants of the flavoprotein component of p-cresol methylhydroxylase that contain noncovalently or covalently bound flavin adenine dinucleotide (FAD) analogues were studied. A very good correlation was found between the efficiency of p-cresol oxidation by these proteins and E(CT), the energy for the maximum wavelength for the charge-transfer band of the complex between the bound flavin and 4-bromophenol, a substrate mimic. The correlation covers a range of k(cat) values that spans over 5 orders of magnitude and values of E(CT) that span 900 mV, and the analysis of the data provided a value of the transfer coefficient, alpha, of 0.31. This study demonstrates clearly that the redox properties of both the bound substrate and the flavin cofactor must be taken into account to explain the relative catalytic efficiencies of the variant flavoproteins.     

Oxygen isotope effects on electron transfer to O2 probed using chemically modified flavins bound to glucose oxidase

Apo-glucose oxidase has been reconstituted with flavins modified in the 7 and 8 positions and characterized with regard to the catalytic rate of O(2) reduction and oxygen-18 isotope effects on this process. Kinetic studies as a function of driving force indicate a reorganization energy for electron transfer to O(2) of lambda = 28 kcal mol(-)(1) at optimal pH, which is similar to the value obtained earlier from temperature dependencies of rates (Roth, J. P.; Klinman, J. P. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 62-67). For the various enzyme-bound flavins, competitive oxygen-18 kinetic isotope effects fall within the narrow range of 1.0266(5) to 1.0279(6), apparently because of the dominant contribution of outer-sphere reorganization to the activation barrier; within the context of semiclassical and quantum mechanical electron transfer theories, the magnitude of the isotope effects reveals the importance of nuclear tunneling.     

Effect of stacking and redox state on optical absorption spectra of melanins -- comparison of theoretical and experimental results

In this work the effect of aggregation and oxidation on the optical absorption of eumelanin oligomeric sheets is investigated by applying quantum mechanics and atomistic simulation studies to a simplified eumelanin structural model that includes 1-3 sheets of hexameric oligomer sheets. The oligomeric hypothesis is supported by AFM characterizations of synthetic eumelanins, formed by auto-oxidation or electrochemical oxidation of dihydroxyindole (DHI). Comparison of calculated absorption spectra to experimental spectra demonstrates a red shift in absorption with oxidation and stacking of the eumelanin and validates the theoretical results.