Enhancement of phosphoprotein analysis using a fluorescent affinity tag and mass spectrometry

A fluorescent affinity tag (FAT) was synthesized and was utilized to selectively modify phosphorylated serine and threonine residues via beta-elimination and Michael addition chemistries in a 'one-step' reaction. This labeling technique was used for covalent modification of both phosphoproteins and phosphopeptides, allowing identification of these molecular species by fluorescence imaging after solution- or gel-based separation methods. In addition to the strong fluorescence of the rhodamine tag, a commercially available antibody can be used to enrich low-abundance post-labeled phosphopeptides present in complex mixtures. Application of this methodology to phosphorylation-site mapping has been evaluated for a phosphoprotein standard, bovine beta-casein. Initial results demonstrated low femtomole detection limits after fluorescence image analysis of FAT-labeled proteins or peptides.     

Rotational diffusion in liquid CCl3F

The ³⁵Cl and ¹⁹F nuclear relaxation data for liquid CCl₃F are analyzed in terms of the extended rotational diffusion model for symmetric top molecules. The J-diffusion limit is shown to be in accordance with the relaxation data, but the M-diffusion limit is incompatible with the data. The ¹⁹F spin-rotation coupling constants obtained from the analysis are consistent with predictions based on chemical shift.     

Construction of phase cycles of minimum cycle length: MakeCycle

A magnetic resonance imaging method is presented for imaging of heterogeneous broad linewidth materials. This method allows for distortionless relaxation weighted imaging by obtaining multiple phase encoded k-space data points with each RF excitation pulse train. The use of this method, turbo spin echo single-point imaging-(turboSPI), leads to decreased imaging times compared to traditional constant-time imaging techniques, as well as the ability to introduce spin-spin relaxation contrast through the use of longer effective echo times. Imaging times in turboSPI are further decreased through the use of low flip angle steady-state excitation. Two-dimensional images of paramagnetic doped agarose phantoms were obtained, demonstrating the contrast and resolution characteristics of the sequence, and a method for both amplitude and phase deconvolution was demonstrated for use in high-resolution turboSPI imaging. Three-dimensional images of a partially water-saturated porous volcanic aggregate (T(2L) approximately 200 ms, Deltanu(1/2) approximately 2500 Hz) contained in a hardened white Portland cement matrix (T(2L) approximately 0.5 ms, Deltanu(1/2) approximately 2500 Hz) and a water-saturated quartz sand (T(2) approximately 300 ms, T(2)(*) approximately 800 microseconds) are shown.     

The elastic sphere under nonsymmetric loading

Existing solutions to boundary value problems arising from an elastic sphere subjected to a body force have been primarily restricted to axisymmetric, conservative loading. In this paper, a method for solving the displacement equations governing the static equilibrium of an elastic sphere subjected to an arbitrary body force and surface displacement is presented. The solutions are obtained in terms of three vector spherical harmonics and expressions for the displacement and stress fields are presented. Additionally, a short discussion indicating extension of these solutions to dynamic problems is included.This research was supported in part by an Organized Research Grant, Southwest Texas State University, 1979.     

Invariant combinations of coefficients in the rotational Hamiltonian

A general development of combinations of parameters in the asymmetric rotor Hamiltonian, which are independent of the coefficients of the contact transformation operators used in the reduction of that Hamiltonian, is given. These invariant combinations are obtained for a Hamiltonian containing up to eighth degree operators. The adaptation to the A and S forms of the Watson Hamiltonian and their utility in conversion of coefficients from one form to another is discussed.     

Internal energy content of n-butylbenzene, bromobenzene, iodobenzene and aniline molecular ions generated by two-photon ionization at 266 nm. A photodissociation study

A technique to investigate photodissociation kinetics on a nanosecond time scale has been devised for molecular ions generated by multiphoton ionization (MPI) using mass-analyzed ion kinetic energy spectrometry. The branching ratio or rate constant has been determined for the photodissociation of the n-butylbenzene, bromobenzene, iodobenzene, and aniline molecular ions generated by MPI at 266 nm. The ion internal energies have been estimated by comparing the measured kinetic data with the previous energy dependence data. The analysis has shown that only those molecular ions generated by two-photon ionization contribute to the photodissociation signals. Around half of the available energy has been found to remain as molecular ion internal energy in the two-photon ionization process. Copyright 1999 John Wiley & Sons, Ltd.     

The whiplash problem: an application of vector spherical harmonics

A brief discussion of an alternate method for finding the displacements of an elastic, homogeneous, isotropic sphere under a rotational loading is given. The method is shown to be applicable to nonconservative loadings and asymmetric geometry. Expressions for the strains and stresses are also given.     

Reorientational correlation functions and memory functions in the J-diffusion limit of the extended rotational diffusion model

New methods for calculating free rotor memory functions and reorientational correlation functions with the J-diffusion model are presented. The methods are much more efficient than previous methods, and have applications in other areas.     

Fibrinolytic poly(dimethyl siloxane) surfaces

PDMS surfaces have been modified to confer both resistance to non-specific protein adsorption and clot lyzing properties. The properties and chemical compositions of the surfaces have been investigated using water contact angle measurements, ATR FT-IR spectroscopy, and XPS. The ability of the PEG component to suppress non-specific protein adsorption was assessed by measurement of radiolabeled fibrinogen uptake from buffer. The adsorption of plasminogen from human plasma to the various surfaces was studied. In vitro experiments demonstrated that lysine-immobilized surfaces with free epsilon-amino groups were able to dissolve fibrin clots, following exposure to plasma and tissue plasminogen activator. [Figure: see text].     

Gas-phase kinetic and mechanistic studies of some interconverting alkylcyclopropene pairs: involvement of dialkylvinylidene intermediates and their quantitative behaviour

The pyrolyses of two isomeric pairs of alkylcyclopropenes, namely 1,3-dimethyl-(15) and 1-ethyl-cyclopropene (16), and 1,3,3-trimethyl-(5) and 1-isopropyl-cyclopropene (17), have been studied in the gas phase. Complete product analyses at various conversions up to 95% were obtained for the decomposition of each compound at five temperatures over a 40 degrees C range. The time-evolution data showed that the isomerisation reactions 15<==>16 and 5<==>17 were occurring. Kinetic modelling of each system allowed the determination of rate constants for these and all other decomposition processes. Tests confirmed that all reactions were unimolecular and homogeneous. Arrhenius parameters are reported for overall reactions and individual product pathways. Further kinetic analysis allowed us to extract the propensities (at 500 K) for 1,3-C-H insertion of the dialkylvinylidene intermediates involved in the rearrangements as follows: k(prim):k(sec): k(tert)= 1:16.5:46.4. Additional experiments with 13C-labelled cyclopropenes yielded alkyl group migration aptitudes for the dialkylvinylidenes (from the pattern of 13C in the alkyne products) as follows: Me:Et:iPr=1:3.1:1.5. Explanations for these trends are given. Another important finding is that of the dramatic rate enhancements for 1,3-diene product formation from the 1-alkylcyclopropenes; this can be explained by either hyperconjugative stabilisation of the vinylcarbene intermediates involved in this pathway, or their differing propensities to 1,2 H-shift. The observed large variations in product distribution amongst these four cyclopropenes is interpreted in terms of these specific effects on individual pathways.