Intercommutation of semilocal strings and Skyrmions

We study the intercommuting of semilocal strings and Skyrmions for a wide range of internal parameters, velocities, and intersection angles by numerically evolving the equations of motion. We find that the collisions of strings and strings, strings and Skyrmions, and Skyrmions and Skyrmions all lead to intercommuting for a wide range of parameters. Even the collisions of unstable Skyrmions and strings lead to intercommuting, demonstrating that the phenomenon of intercommuting is very robust, extending to dissimilar field configurations that are not stationary solutions. Even more remarkably, at least for the semilocal U(2) formulation considered here, all intercommutations trigger a reversion to Nielsen-Olesen strings.     

Numerical solutions for symmetric Bianchi type IX universes

We find numerical solutions for symmetic Bianchi type IX universes. These numerical solutions coincide almost exactly with diagrammatic solutions found previously.     

A Versatile Approach Towards Nucleobase‐Modified Aptamers

A novel and versatile method has been developed for modular expansion of the chemical space of nucleic acid libraries, thus enabling the generation of nucleobase‐modified aptamers with unprecedented recognition properties. Reintroduction of the modification after enzymatic replication gives broad access to many chemical modifications. This wide applicability, which is not limited to a single modification, will rapidly advance the application of in vitro selection approaches beyond what is currently feasible and enable the generation of aptamers to many targets that have so far not been addressable.     

DYNGA: a general purpose QM-MM-MD program. I. Application to water

We present a general purpose QM-MM-MD engine (DYNGA) designed to test alternative hybrid Hamiltonians geared towards the treatment of problems of interest in structural biology including the use of experimental data constraints. In this first presentation we use DYNGA to explore the behaviour of a traditional QM-MM approach in the treatment of the water—water interaction. We find the potential energy hypersurface for the water dimer computed with the HF 4–31G*/TIP3P hybrid Hamiltonian tends to be too flat. We also explore the effect of using traditional QM-MM techniques on proton wires and conclude there is a need for improvement, possibly addressed by using polarizable force fields.