Rapid high-resolution four-dimensional NMR spectroscopy using the filter diagonalization method and its advantages for detailed structural elucidation of oligosaccharides

Four-dimensional nuclear magnetic resonance spectroscopy with high resolution of signals in the indirect dimensions is reported as an implementation of the filter diagonalization method (FDM). Using an oligosaccharide derivatized with 13C-labeled acetyl isotags, a four-dimensional constant-time pulse sequence was tailored for conjoint use with the FDM. Results demonstrate that high resolution in all dimensions can be achieved using a relatively short experimental time period (19 h), even though the spectrum is highly congested in the direct and all three indirect dimensions. The combined use of isotags, constant-time pulse sequences, and FDM permits rapid isolation of sugar ring proton spin systems in multiple dimensions and enables all endocyclic J-couplings to be simply measured, the key goal to assigning sugar stereochemistry and anomeric configuration. A general method for rapid, unambiguous elucidation of spin systems in oligosaccharides has been a long-sought goal of carbohydrate NMR, and isotags combined with the FDM now enable this to be easily performed. Additional general advantages of the FDM program for generating high-resolution 2D slices in any dimension from a 4D spectrum are emphasized.     

Progress on the two-dimensional filter diagonalization method. An efficient doubling scheme for two-dimensional constant-time NMR

An efficient way to treat two-dimensional (2D) constant-time (CT) NMR data using the filter diagonalization method (FDM) is presented. In this scheme a pair of N- and P-type data sets from a 2D CT NMR experiment are processed jointly by FDM as a single data set, twice as large, in which the signal effectively evolves in time for twice as long. This scheme is related to "mirror-image" linear prediction, but with the distinction that the data are directly used, without any preprocessing such as Fourier transformation along one dimension, or point-by-point reflection. As the signal has nearly perfect Lorentzian line shape in the CT dimension, it can be efficiently handled by the FDM approach. Applied to model and experimental signals, the scheme shows significant resolution improvement, and appears to tolerate noise reasonably well. Other complex aspects of multidimensional FDM are discussed and illustrated.     

Regularized resolvent transform for direct calculation of 45 degrees projections of 2D J spectra

The regularized resolvent transform (RRT) has been applied in a novel way to J-resolved spectra. This involves the direct calculation of the 45 degrees projection without constructing the 2D spectrum. The results show a significant resolution enhancement over that obtained by the 45 degrees projection of a 2D Fourier spectrum, even for much larger signals. In particular, RRT is able to resolve peaks that belong to different overlapping multiplets in a very crowded spectral region, where the conventional technique fails for any signal size. The resolving power of this method along with the significantly shorter signals required, make this method a powerful tool in spectral assignment.     

RRT: the regularized resolvent transform for high-resolution spectral estimation

A new numerical expression, called the regularized resolvent transform (RRT), is presented. RRT is a direct transformation of the truncated time-domain data into a frequency-domain spectrum and is suitable for high-resolution spectral estimation of multidimensional time signals. One of its forms, under the condition that the signal consists only of a finite sum of damped sinusoids, turns out to be equivalent to the exact infinite time discrete Fourier transformation. RRT naturally emerges from the filter diagonalization method, although no diagonalization is required. In RRT the spectrum at each frequency s is expressed in terms of the resolvent R(s)(-1) of a small data matrix R(s), that is constructed from the time signal. Generally, R is singular, which requires certain regularization. In particular, the Tikhonov regularization, R(-1) approximately [R(dagger)R + q(2)](-1)R(dagger) with regularization parameter q, appears to be computationally both efficient and very stable. Numerical implementation of RRT is very inexpensive because even for extremely large data sets the matrices involved are small. RRT is demonstrated using model 1D and experimental 2D NMR signals. Copyright 2000 Academic Press.     

Arrangements of minors in the positive Grassmannian and a triangulation of the hypersimplex

The structure of zero and nonzero minors in the Grassmannian leads to rich combinatorics of matroids. In this paper, we investigate an even richer structure of possible equalities and inequalities between the minors in the positive Grassmannian. It was previously shown that arrangements of equal minors of largest value are in bijection with the simplices in a certain triangulation of the hypersimplex that was studied by Stanley, Sturmfels, Lam and Postnikov. Here, we investigate the entire set of arrangements and its relations with this triangulation. First, we show that second largest minors correspond to the facets of the simplices. We then introduce the notion of cubical distance on the dual graph of the triangulation and study its relations with the arrangement of t-th largest minors. Finally, we show that arrangements of largest minors induce a structure of a partially ordered set on the entire collection of minors. We use this triangulation of the hypersimplex to describe a two-dimensional grid structure on this poset.     

Higher order symmetrizer and application to an unusual transport equation

We study a class of stationary transport equation with nonlocal low-order tems We obtain the existence and uniqueness of a solution in sobolev spaces     

求解复杂湍流的非线性涡黏性系数模型和代数应力模型

非线性涡黏性系数模型和代数应力模型联系了线性涡黏性系数湍流模型和完整的微分 雷诺应力模型.随着它们受到日益关注,其形式也越来越多样化.本篇综述的目的是对这些模 型加以总结并比较它们之间的共同点及不同之处,指出它们与完整微分雷诺应力模型之间的 关系,以及相对于线性涡黏性系数模型而言它们在预报流场上所具有的优势.     

Thermodynamics and equilibrium structure of Ne38 cluster: quantum mechanics versus classical

The equilibrium properties of classical Lennard-Jones (LJ38) versus quantum Ne38 Lennard-Jones clusters are investigated. The quantum simulations use both the path-integral Monte Carlo (PIMC) and the recently developed variational-Gaussian wave packet Monte Carlo (VGW-MC) methods. The PIMC and the classical MC simulations are implemented in the parallel tempering framework. The classical heat capacity Cv(T) curve agrees well with that of Neirotti et al. [J. Chem. Phys. 112, 10340 (2000)], although a much larger confining sphere is used in the present work. The classical Cv(T) shows a peak at about 6 K, interpreted as a solid-liquid transition, and a shoulder at approximately 4 K, attributed to a solid-solid transition involving structures from the global octahedral (Oh) minimum and the main icosahedral (C5v) minimum. The VGW method is used to locate and characterize the low energy states of Ne38, which are then further refined by PIMC calculations. Unlike the classical case, the ground state of Ne38 is a liquidlike structure. Among the several liquidlike states with energies below the two symmetric states (Oh and C5v), the lowest two exhibit strong delocalization over basins associated with at least two classical local minima. Because the symmetric structures do not play an essential role in the thermodynamics of Ne38, the quantum heat capacity is a featureless curve indicative of the absence of any structural transformations. Good agreement between the two methods, VGW and PIMC, is obtained. The present results are also consistent with the predictions by Calvo et al. [J. Chem. Phys. 114, 7312 (2001)] based on the quantum superposition method within the harmonic approximation. However, because of its approximate nature, the latter method leads to an incorrect assignment of the Ne38 ground state as well as to a significant underestimation of the heat capacity.     

Structural transitions and melting in LJ(74-78) Lennard-Jones clusters from adaptive exchange Monte Carlo simulations

Phase changes in Lennard-Jones (LJ) clusters containing between 74 and 78 atoms are investigated by means of exchange Monte Carlo simulations in the canonical ensemble. The replica temperatures are self-adapted to facilitate the convergence. Although the 74- and 78-atom clusters have icosahedral global minima, the clusters with 75-77 atoms have decahedral ground-state structures and they undergo a structural transition to icosahedral minima before melting. The structural transitions are characterized by quenching and by looking at the Q4 and Q6 orientational bond order parameters. The transition temperatures are estimated to be 0.114, 0.065, and 0.074 reduced units for LJ75, LJ76, and LJ77, respectively. These values, their ordering and the associated latent heats are compared with other estimates based on the harmonic superposition approach.